Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.4e-128 460.3 223 100.0
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.8e-123 445.3 223 96.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 6.3e-91 337.8 202 81.7
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 9.5e-71 270.8 165 73.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 4.7e-70 268.5 172 72.1
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.7e-70 268.5 164 73.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 7.5e-68 261.2 171 71.3
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.3e-67 260.4 143 81.8
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.3e-67 260.4 192 64.1
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.7e-67 260.0 208 62.0
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 2.2e-67 259.6 169 70.4
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.2e-67 259.6 181 66.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.9e-67 259.2 145 81.4
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 8.3e-67 257.7 211 60.2
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.1e-66 257.3 175 69.1
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.4e-66 256.9 180 67.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.4e-66 256.9 198 62.1
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.4e-66 256.9 198 62.1
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.8e-66 256.5 208 61.1
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 2.4e-66 256.1 200 65.0
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.1e-66 255.4 209 62.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 4.1e-66 255.4 146 78.1
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 7.0e-66 254.6 180 66.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.2e-65 253.8 205 61.0
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.7e-65 252.7 168 68.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.7e-65 252.7 210 60.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.7e-65 252.7 191 65.4
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.7e-65 252.7 204 60.8
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.7e-65 252.7 145 80.7
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 4.6e-65 251.9 152 75.7
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 5.9e-65 251.5 144 77.1
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 5.9e-65 251.5 206 60.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 7.8e-65 251.1 204 60.3
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.8e-65 251.1 205 59.5
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 7.8e-65 251.1 193 62.7
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.0e-64 250.8 166 72.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.0e-64 250.8 218 59.6
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.3e-64 250.4 144 78.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.3e-64 250.4 173 69.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.7e-64 250.0 156 72.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 2.3e-64 249.6 145 80.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 3.0e-64 249.2 144 77.8
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 3.0e-64 249.2 144 75.0
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 3.9e-64 248.8 198 59.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.9e-64 248.8 165 69.7
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 5.0e-64 248.4 145 78.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.0e-64 248.4 182 65.9
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-63 247.3 177 65.5
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.1e-63 247.3 149 75.2
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.9e-63 246.5 145 76.6
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.9e-63 246.5 144 77.1
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.5e-63 246.1 194 62.4
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 2.5e-63 246.1 168 66.7
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 4.3e-63 245.4 160 73.8
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.6e-63 245.0 144 75.0
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 5.6e-63 245.0 170 65.3
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 7.3e-63 244.6 193 62.2
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 7.3e-63 244.6 147 74.1
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 9.5e-63 244.2 199 62.8
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.2e-62 243.8 145 75.9
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.2e-62 243.8 147 74.1
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.2e-62 243.8 193 61.7
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.6e-62 243.4 158 70.9
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.6e-62 243.4 145 78.6
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.6e-62 243.4 165 67.9
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.1e-62 243.0 145 75.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 2.1e-62 243.0 152 70.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 2.1e-62 243.0 173 65.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 3.6e-62 242.3 146 75.3
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 4.7e-62 241.9 182 65.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 6.2e-62 241.5 193 60.1
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 8.0e-62 241.1 145 74.5
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.8e-61 240.0 158 70.3
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.8e-61 240.0 174 66.1
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.3e-61 239.6 169 66.3
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 3.1e-61 239.2 144 74.3
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.1e-61 239.2 145 75.2
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.1e-61 239.2 145 75.2
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 5.2e-61 238.4 169 66.9
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.2e-61 238.4 169 66.9
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.0e-60 236.5 230 53.9
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.3e-59 233.8 162 71.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.7e-57 226.1 143 71.3
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.7e-56 223.4 148 69.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 6.6e-56 221.5 147 69.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 5.6e-55 218.4 151 64.2
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.2e-54 217.2 181 59.1
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 8.1e-54 214.5 204 54.9
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.1e-53 212.6 208 52.9
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.1e-53 212.6 208 52.9
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 3.1e-53 212.6 122 77.9
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 8.9e-53 211.1 122 76.2
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.0e-52 209.9 145 69.7
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 4.4e-52 208.8 144 69.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 9.8e-52 207.6 150 64.7
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 2.2e-51 206.5 150 65.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.2e-51 206.5 152 68.4
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 8.3e-51 204.5 150 64.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.1e-50 204.1 113 81.4
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.1e-50 204.1 182 57.7
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.4e-50 203.8 122 73.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.6e-49 200.3 176 55.1
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 4.6e-49 198.7 122 71.3
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 5.1e-48 195.3 149 60.4
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.6e-48 194.5 169 56.8
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.9e-47 193.4 150 59.3
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 4.3e-47 192.2 147 63.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 5.2e-45 185.3 125 72.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 5.2e-45 185.3 148 56.8
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.0e-44 183.3 120 75.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 4.4e-44 182.2 120 75.0
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 4.4e-44 182.2 113 75.2
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.4e-42 177.2 151 57.0
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 3.2e-42 176.0 145 58.6
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 9.2e-42 174.5 113 72.6
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.2e-41 174.1 110 71.8
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.3e-40 170.6 111 70.3
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.3e-40 169.9 133 58.6
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 3.0e-40 169.5 121 64.5
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.0e-40 169.5 121 64.5
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.1e-40 168.7 98 73.5
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.2e-38 164.1 106 69.8
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 3.6e-38 162.5 114 64.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 8.1e-38 161.4 99 73.7
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 9.9e-36 154.5 112 60.7
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.8e-35 152.5 104 69.2
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.3e-27 127.5 69 84.1
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.9e-27 126.3 154 40.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.2e-26 122.5 88 65.9
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.1e-25 120.2 76 73.7
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 3.9e-24 115.9 75 64.0
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 5.1e-24 115.5 115 48.7
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-23 114.4 68 73.5
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 7.4e-23 111.7 72 65.3
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 6.9e-21 105.1 85 61.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 2.6e-20 103.2 141 41.1
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.4e-20 102.8 97 47.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.2e-18 95.9 61 67.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.5e-15 86.7 80 47.5
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-13 81.3 58 63.8
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 5.3e-13 79.0 70 54.3
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 3.8e-11 72.8 48 70.8
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.6e-06 57.4 53 47.2


User provided reference genes

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