Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 3.5e-289 997.7 535 100.0
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 9.4e-250 866.7 535 88.4
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 1.1e-205 720.3 551 73.9
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.6e-161 573.5 536 63.4
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 8.7e-147 524.6 536 58.2
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 6.3e-145 518.5 537 57.7
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 1.1e-144 517.7 539 58.1
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 3.1e-144 516.2 538 58.2
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 9.0e-144 514.6 538 57.8
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.3e-142 510.8 548 58.0
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 1.1e-141 507.7 546 55.3
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 5.5e-141 505.4 545 56.7
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 2.7e-140 503.1 542 56.5
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 2.7e-140 503.1 549 54.1
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 3.6e-140 502.7 542 57.0
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 1.0e-139 501.1 539 57.3
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 2.3e-139 500.0 547 55.4
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 8.8e-139 498.0 539 56.4
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 3.3e-138 496.1 540 56.3
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 7.4e-138 495.0 547 56.3
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 3.1e-136 489.6 544 54.0
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 5.3e-136 488.8 550 55.8
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.2e-135 487.6 544 54.4
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 2.0e-135 486.9 544 53.5
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 7.7e-135 485.0 547 55.2
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.3e-134 484.2 538 56.1
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 1.7e-134 483.8 546 54.4
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 2.2e-134 483.4 546 55.9
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 5.0e-134 482.3 544 56.1
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.1e-133 481.1 547 56.1
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 4.2e-133 479.2 536 55.0
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 4.2e-133 479.2 539 55.1
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 5.5e-133 478.8 549 55.4
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 9.4e-133 478.0 545 52.8
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 1.2e-132 477.6 539 53.6
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 3.6e-132 476.1 545 54.1
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 3.6e-132 476.1 545 54.1
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 3.6e-132 476.1 544 55.7
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 4.7e-132 475.7 537 54.4
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 2.3e-131 473.4 547 55.2
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.0e-131 473.0 543 53.4
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 3.9e-131 472.6 545 54.3
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 8.8e-131 471.5 546 54.2
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 8.8e-131 471.5 544 53.5
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.1e-130 471.1 544 53.7
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 1.1e-130 471.1 546 53.5
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 2.6e-130 469.9 547 52.8
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 3.3e-130 469.5 546 52.7
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 5.7e-130 468.8 541 54.2
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 7.4e-130 468.4 545 54.1
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 2.8e-129 466.5 545 53.6
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 3.7e-129 466.1 545 53.2
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 1.4e-128 464.2 535 53.8
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.4e-128 464.2 546 54.4
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 5.3e-128 462.2 546 52.7
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 9.1e-128 461.5 542 51.5
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 2.0e-127 460.3 548 50.5
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 2.0e-127 460.3 545 55.4
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.0e-127 460.3 536 52.4
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 1.0e-126 458.0 538 52.2
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 1.0e-126 458.0 545 51.4
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 1.0e-126 458.0 544 52.2
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 8.5e-126 454.9 548 51.8
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 1.1e-125 454.5 545 51.9
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 8.0e-124 448.4 539 52.1
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 1.4e-123 447.6 547 51.0
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 6.7e-123 445.3 553 50.6
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.5e-122 444.1 548 51.6
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.0e-122 443.7 540 52.0
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.0e-122 443.7 550 52.5
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 5.3e-120 435.6 543 52.1
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 1.3e-118 431.0 547 50.3
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 5.0e-118 429.1 548 49.6
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 4.2e-117 426.0 536 50.6
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 5.5e-117 425.6 537 50.5
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 1.2e-116 424.5 556 50.0
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 2.1e-116 423.7 543 49.9
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 1.0e-115 421.4 550 51.1
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 2.3e-115 420.2 548 48.5
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 5.2e-115 419.1 546 50.4
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 7.5e-114 415.2 550 50.7
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 9.7e-114 414.8 534 50.6
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.3e-113 414.5 542 49.6
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 1.7e-113 414.1 539 49.0
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 1.8e-112 410.6 549 50.8
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 5.0e-110 402.5 540 47.0
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 8.5e-110 401.7 548 48.2
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 5.5e-109 399.1 454 53.1
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 1.0e-107 394.8 545 49.4
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 2.3e-107 393.7 545 49.2
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 6.5e-102 375.6 551 46.6
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 3.3e-101 373.2 538 47.8
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 3.4e-98 363.2 390 53.6
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.1e-92 344.0 362 57.2
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 1.2e-90 338.2 549 42.1
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 1.1e-88 331.6 604 40.9
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 2.0e-87 327.4 344 58.4
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 4.3e-85 319.7 384 53.1
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 2.1e-84 317.4 542 42.1
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 2.0e-82 310.8 557 41.1
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 1.7e-57 228.0 344 48.0
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 7.6e-50 202.6 343 43.1
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 1.3e-44 185.3 590 32.7
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 4.5e-42 176.8 226 49.1
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 8.7e-38 162.5 196 50.5
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 8.7e-30 136.0 356 34.6
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 4.8e-28 130.2 166 48.2
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 5.1e-22 110.2 305 34.4
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 3.3e-21 107.5 126 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 7.7e-18 96.3 164 39.0
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 2.7e-07 61.2 52 57.7
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 8.0e-07 59.7 69 46.4
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 1.0e-06 59.3 65 46.2
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.4e-06 58.9 72 43.1
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 2.3e-06 58.2 59 49.2
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.0e-06 57.8 49 57.1
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 3.0e-06 57.8 46 58.7
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 5.2e-06 57.0 58 48.3
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 5.2e-06 57.0 59 47.5
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 5.2e-06 57.0 59 47.5
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 6.7e-06 56.6 88 44.3
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 8.8e-06 56.2 46 58.7
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 8.8e-06 56.2 52 51.9
HPP92_005314 Vanilla planifolia HOM05D004574 ORTHO05D005612 8.8e-06 56.2 69 40.6
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 8.8e-06 56.2 69 40.6


User provided reference genes

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