Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.3e-281 970.3 475 100.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.0e-255 884.0 430 99.8
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.7e-215 752.7 429 87.4
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 4.2e-193 678.3 441 76.2
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.3e-191 673.3 432 77.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 1.8e-151 540.0 433 63.5
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 2.0e-150 536.6 433 64.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 3.1e-148 529.3 429 63.2
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 4.1e-148 528.9 435 61.8
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 1.2e-147 527.3 432 62.5
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 7.8e-147 524.6 429 62.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 3.3e-145 519.2 446 61.9
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 7.3e-145 518.1 435 61.6
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 9.5e-145 517.7 433 62.4
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 9.5e-145 517.7 446 61.2
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 9.5e-145 517.7 424 64.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 2.8e-144 516.2 429 62.7
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.4e-143 513.8 436 61.7
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 3.0e-143 512.7 428 62.6
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 4.0e-143 512.3 434 61.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 5.2e-143 511.9 448 60.3
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 6.8e-143 511.5 434 61.1
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 7.5e-142 508.1 441 59.2
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.3e-141 507.3 429 62.2
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 2.2e-141 506.5 429 62.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 2.2e-141 506.5 461 59.4
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.8e-140 503.4 429 60.1
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 2.4e-140 503.1 430 60.9
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 5.4e-140 501.9 433 60.3
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.2e-139 500.7 450 58.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 4.6e-139 498.8 434 59.7
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.3e-138 497.3 433 59.8
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 1.7e-138 496.9 440 58.4
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.9e-138 495.7 443 60.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 8.6e-138 494.6 433 59.4
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 8.6e-138 494.6 443 60.3
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 3.3e-137 492.7 440 58.2
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 3.3e-137 492.7 426 61.5
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 5.6e-137 491.9 427 60.0
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 7.3e-137 491.5 431 60.1
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.2e-136 488.4 418 63.6
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 6.2e-136 488.4 422 61.1
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 8.0e-136 488.0 427 59.5
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 8.0e-136 488.0 427 59.5
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 1.0e-135 487.6 421 60.6
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.0e-135 487.6 422 60.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.3e-135 486.5 436 57.6
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 4.0e-135 485.7 476 55.3
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 8.9e-135 484.6 427 60.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 8.9e-135 484.6 422 60.7
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 8.9e-135 484.6 427 59.5
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 8.9e-135 484.6 433 59.1
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 2.6e-134 483.0 429 58.7
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 2.6e-134 483.0 426 58.7
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.4e-134 482.6 423 60.5
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 4.4e-134 482.3 426 60.3
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 7.5e-134 481.5 432 60.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 7.5e-134 481.5 426 59.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 1.7e-133 480.3 438 57.3
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.9e-133 479.6 430 60.5
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.7e-133 479.2 430 58.8
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 6.4e-133 478.4 434 58.5
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 8.3e-133 478.0 428 59.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 1.4e-132 477.2 430 58.1
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.9e-132 476.9 447 56.6
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 7.0e-132 474.9 426 59.6
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.6e-131 473.8 422 60.2
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 2.0e-131 473.4 428 58.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.7e-131 473.0 430 58.4
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 2.7e-131 473.0 431 58.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 3.5e-131 472.6 425 58.1
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 4.6e-131 472.2 430 58.1
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 1.7e-130 470.3 429 59.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 2.3e-130 469.9 430 57.9
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 3.9e-130 469.2 427 57.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 3.9e-130 469.2 428 57.7
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 5.0e-130 468.8 434 58.1
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 6.6e-130 468.4 438 59.1
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.1e-129 467.6 430 58.4
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-129 467.2 432 57.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.9e-129 466.8 435 57.7
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 2.5e-129 466.5 453 55.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 5.6e-129 465.3 432 58.8
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 1.2e-128 464.2 429 56.9
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.2e-128 464.2 434 55.8
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 2.1e-128 463.4 459 55.1
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 1.1e-127 461.1 433 56.8
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 1.1e-127 461.1 433 54.7
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.8e-127 460.3 429 57.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 6.8e-127 458.4 431 56.8
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 5.8e-126 455.3 439 56.3
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 7.5e-126 454.9 425 56.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 7.5e-126 454.9 443 56.7
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 9.9e-126 454.5 431 56.1
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 1.3e-125 454.1 430 57.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 4.1e-124 449.1 442 55.7
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.6e-123 447.2 446 54.7
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 2.1e-123 446.8 428 55.1
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 4.6e-123 445.7 448 52.2
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 1.3e-122 444.1 436 56.2
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 6.6e-122 441.8 431 55.9
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 9.5e-121 438.0 446 54.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 1.2e-120 437.6 437 55.1
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 2.1e-120 436.8 436 55.3
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.8e-120 436.4 441 54.4
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.8e-120 436.4 437 52.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 3.6e-120 436.0 435 55.9
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 3.6e-120 436.0 435 56.8
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 4.7e-120 435.6 438 55.9
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 4.7e-120 435.6 457 53.4
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 4.7e-120 435.6 439 54.2
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 6.2e-120 435.3 437 54.7
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 6.2e-120 435.3 437 54.7
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 6.2e-120 435.3 441 54.2
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.4e-119 434.1 440 56.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.4e-119 434.1 437 55.1
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.8e-119 433.7 438 54.3
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 1.2e-118 431.0 440 55.7
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 2.0e-118 430.3 439 54.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 7.6e-118 428.3 383 58.7
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 9.9e-118 427.9 441 54.6
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.8e-117 426.0 445 52.6
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 3.8e-117 426.0 426 54.5
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-115 420.6 450 53.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.0e-115 418.7 430 54.7
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.5e-113 414.1 425 53.6
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.5e-113 414.1 427 51.5
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.2e-110 404.4 463 49.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.8e-110 402.1 433 51.5
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 3.8e-109 399.4 431 53.1
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.9e-109 399.1 383 57.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.1e-104 381.7 438 46.1
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 8.4e-101 371.7 497 45.9
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 8.4e-101 371.7 453 49.2
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 4.2e-100 369.4 462 45.9
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.3e-98 364.4 460 45.9
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.9e-98 362.8 217 83.4
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.4e-95 354.4 521 43.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 3.4e-94 349.7 250 70.0
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.4e-94 349.7 248 67.3
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.6e-94 348.6 428 47.7
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 6.4e-93 345.5 444 45.3
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.1e-89 334.7 424 46.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 8.2e-88 328.6 435 46.0
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 2.5e-76 290.4 449 39.4
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 4.2e-76 289.7 243 59.7
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.1e-75 285.8 383 44.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.3e-73 280.0 454 38.5
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.7e-73 279.3 243 53.9
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.0e-69 268.5 246 52.8
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.3e-57 226.9 157 70.1
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 4.4e-57 226.5 261 50.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.1e-55 219.9 261 48.3
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.7e-48 198.0 246 41.9
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.2e-44 183.3 205 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.1e-43 181.0 236 42.8
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.7e-43 180.6 133 64.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.3e-42 177.6 242 37.6
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-38 164.5 281 37.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 9.2e-31 139.0 85 80.0
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 4.7e-27 126.7 191 36.1
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.4e-25 120.6 185 41.6
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 5.2e-18 96.7 65 70.8
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.4e-17 94.0 123 48.8
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.4e-15 87.8 83 48.2
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.2e-14 85.5 169 29.6
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 2.8e-11 74.3 175 32.0
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.4e-10 72.0 50 66.0


User provided reference genes

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