Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.0e-239 832.0 410 100.0
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.6e-233 811.2 410 97.6
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 3.6e-193 678.3 444 77.9
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 2.6e-175 619.0 445 74.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.6e-145 520.0 387 69.0
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.0e-139 499.2 443 62.5
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.1e-132 476.5 391 65.2
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.5e-130 470.3 390 66.2
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 4.1e-128 462.2 389 64.5
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.3e-126 457.2 487 53.8
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-126 457.2 430 61.4
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.9e-123 445.7 494 52.6
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.3e-121 440.7 388 62.6
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.2e-121 439.9 409 60.4
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.2e-121 439.9 443 54.6
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 6.3e-121 438.3 407 60.4
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 3.1e-120 436.0 404 61.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.1e-120 434.5 408 59.6
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.6e-119 433.7 409 59.7
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 5.0e-118 428.7 390 61.0
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 3.2e-117 426.0 409 59.4
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 9.4e-117 424.5 393 61.1
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.2e-116 424.1 491 51.1
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-116 424.1 491 51.1
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.6e-116 423.7 494 51.0
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 3.6e-116 422.5 389 59.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 6.1e-116 421.8 444 54.3
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.0e-115 421.0 444 53.4
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.8e-115 418.3 411 58.2
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 2.0e-114 416.8 390 60.3
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.7e-114 415.2 385 62.3
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.2e-113 413.3 402 59.7
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 3.7e-113 412.5 391 59.3
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.8e-112 410.2 392 58.2
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.8e-112 410.2 407 58.2
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.4e-112 409.8 383 59.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 2.4e-112 409.8 506 51.6
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.7e-111 406.4 445 53.3
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 3.5e-111 406.0 390 59.5
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.5e-111 406.0 390 59.5
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.5e-111 406.0 390 59.5
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.5e-111 406.0 390 59.5
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 5.9e-111 405.2 384 59.1
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.3e-110 404.1 385 59.2
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.2e-110 403.3 411 56.2
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.8e-110 402.5 413 57.6
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 5.0e-110 402.1 464 51.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.0e-110 402.1 382 58.4
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 2.5e-109 399.8 383 57.4
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 3.2e-109 399.4 390 58.2
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 5.5e-109 398.7 388 55.4
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.2e-108 397.5 412 54.6
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.6e-108 397.1 390 59.0
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 2.1e-108 396.7 442 52.9
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 8.0e-108 394.8 391 59.3
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.4e-107 394.0 390 58.5
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.0e-107 392.9 396 57.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 3.4e-106 389.4 426 56.3
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 5.7e-106 388.7 445 52.1
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 9.8e-106 387.9 385 55.8
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.8e-105 386.3 448 52.7
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.1e-104 384.4 501 49.1
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.4e-104 384.0 385 60.0
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.8e-104 383.6 412 57.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 3.1e-104 382.9 440 50.9
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 5.4e-104 382.1 394 58.9
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.0e-103 380.2 396 55.6
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.7e-102 377.1 383 56.4
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 3.8e-102 375.9 413 52.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 5.0e-102 375.6 434 52.8
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 6.1e-100 368.6 377 54.9
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.4e-99 367.5 411 55.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-99 367.5 446 50.0
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.9e-97 359.8 411 55.2
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.7e-94 350.5 395 53.9
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.9e-94 349.4 391 54.7
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.1e-93 347.8 400 53.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.6e-92 344.0 395 53.9
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.6e-92 344.0 403 51.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.6e-92 342.8 466 48.1
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 5.2e-91 339.0 421 51.5
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.2e-90 337.8 463 46.9
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 5.8e-90 335.5 414 51.2
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.1e-88 331.3 397 50.9
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 6.0e-87 325.5 493 45.0
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 2.3e-86 323.6 447 47.4
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 3.0e-86 323.2 406 47.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.5e-85 320.9 416 49.5
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 4.3e-85 319.3 414 48.8
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 4.3e-85 319.3 412 48.3
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.4e-83 314.3 417 48.7
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 8.9e-83 311.6 409 49.1
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.2e-82 311.2 415 49.2
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.4e-82 309.7 398 49.7
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.9e-81 306.6 415 48.2
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 2.7e-79 300.1 461 44.9
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.7e-78 297.4 384 47.1
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.3e-77 293.1 403 47.6
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 5.6e-77 292.4 462 43.5
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 7.3e-77 292.0 379 49.1
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.3e-77 292.0 379 47.8
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 9.5e-77 291.6 393 47.6
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.6e-76 290.8 412 46.6
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.1e-76 290.4 412 46.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.8e-76 290.0 335 53.7
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 4.7e-76 289.3 418 46.4
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.2e-74 284.6 442 46.2
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.9e-72 277.3 416 46.2
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 5.4e-72 275.8 430 46.0
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.7e-71 273.5 394 45.4
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 3.0e-70 270.0 412 45.9
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.8e-65 253.1 278 54.7
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.1e-64 251.5 360 45.3
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 3.2e-64 250.0 323 46.4
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.9e-62 243.0 276 54.0
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 6.2e-60 235.7 323 44.3
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.4e-59 234.6 271 52.4
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.4e-59 233.8 220 52.7
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 3.9e-54 216.5 383 41.3
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 5.6e-53 212.6 377 43.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.6e-53 212.6 194 54.6
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.5e-48 196.1 389 39.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.3e-46 190.7 262 44.7
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.1e-45 188.3 359 40.1
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 4.6e-39 166.4 108 76.9
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.3e-38 164.9 305 41.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.3e-36 158.3 160 50.6
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.9e-31 139.0 300 34.0
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.0e-30 137.1 290 33.1
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 4.3e-29 133.3 92 67.4
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 8.2e-28 129.0 219 36.1
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 2.2e-25 120.9 116 46.6
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.2e-24 117.1 324 30.6
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.2e-24 116.7 122 52.5
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 6.3e-20 102.8 199 36.7
Ah.02g124260 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.8e-19 101.3 91 63.7
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 4.2e-16 90.1 68 66.2
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 3.6e-15 87.0 84 54.8
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.1e-11 75.5 91 52.7
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.9e-08 64.7 52 65.4


User provided reference genes

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