Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 2.9e-51 204.9 103 100.0
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 3.3e-34 148.3 78 94.9
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 8.1e-33 143.7 95 72.6
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.8e-32 142.5 84 82.1
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 2.3e-32 142.1 95 71.6
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 3.1e-32 141.7 81 84.0
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 3.1e-32 141.7 84 82.1
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 4.0e-32 141.4 84 78.6
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 4.0e-32 141.4 95 72.6
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 4.0e-32 141.4 95 72.6
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 4.0e-32 141.4 95 73.7
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 4.0e-32 141.4 102 70.6
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 5.2e-32 141.0 81 84.0
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 6.8e-32 140.6 84 81.0
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 6.8e-32 140.6 81 82.7
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 6.8e-32 140.6 81 82.7
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 8.9e-32 140.2 81 82.7
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 8.9e-32 140.2 81 80.2
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 1.5e-31 139.4 100 69.0
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.5e-31 139.4 81 81.5
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 2.6e-31 138.7 81 80.2
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 2.6e-31 138.7 80 80.0
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 2.6e-31 138.7 81 80.2
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 3.4e-31 138.3 95 71.6
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 4.4e-31 137.9 83 80.7
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 5.8e-31 137.5 100 70.0
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 5.8e-31 137.5 84 78.6
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 7.5e-31 137.1 84 78.6
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 7.5e-31 137.1 81 79.0
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 7.5e-31 137.1 80 81.2
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 9.9e-31 136.7 98 68.4
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 1.3e-30 136.3 95 70.5
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 1.3e-30 136.3 81 79.0
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 1.7e-30 136.0 81 77.8
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 1.7e-30 136.0 84 77.4
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 1.7e-30 136.0 98 70.4
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 1.7e-30 136.0 84 78.6
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 2.2e-30 135.6 81 77.8
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 3.7e-30 134.8 84 77.4
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 1.4e-29 132.9 81 76.5
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.4e-29 132.9 84 72.6
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.4e-29 132.9 84 72.6
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 1.4e-29 132.9 84 72.6
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 1.4e-29 132.9 81 77.8
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 4.1e-29 131.3 81 76.5
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 7.1e-29 130.6 81 75.3
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 7.1e-29 130.6 81 75.3
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 9.2e-29 130.2 81 76.5
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 1.2e-28 129.8 81 75.3
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 2.1e-28 129.0 100 62.0
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 2.1e-28 129.0 80 77.5
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 2.7e-28 128.6 80 76.2
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 2.7e-28 128.6 81 74.1
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 2.7e-28 128.6 81 74.1
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 3.5e-28 128.3 100 64.0
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 3.5e-28 128.3 80 76.2
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 4.6e-28 127.9 82 72.0
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 1.3e-27 126.3 81 72.8
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 1.3e-27 126.3 80 75.0
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.3e-27 126.3 80 75.0
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 2.3e-27 125.6 83 73.5
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 2.3e-27 125.6 100 63.0
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 6.6e-27 124.0 83 67.5
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 1.1e-26 123.2 95 66.3
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 1.1e-26 123.2 83 67.5
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 1.1e-26 123.2 84 69.0
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 1.9e-26 122.5 98 64.3
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 2.5e-26 122.1 93 61.3
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 7.3e-26 120.6 81 74.1
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 9.5e-26 120.2 96 64.6
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 9.5e-26 120.2 85 64.7
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 1.6e-25 119.4 113 54.9
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 1.6e-25 119.4 84 71.4
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 2.8e-25 118.6 85 63.5
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 4.7e-25 117.9 83 71.1
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 6.2e-25 117.5 83 71.1
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 6.2e-25 117.5 80 72.5
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 4.0e-24 114.8 81 69.1
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 4.0e-24 114.8 84 61.9
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 5.2e-24 114.4 81 66.7
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 5.2e-24 114.4 81 66.7
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 8.9e-24 113.6 79 70.9
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 1.2e-23 113.2 81 67.9
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 1.5e-23 112.8 98 57.1
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 2.0e-23 112.5 100 59.0
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 7.6e-23 110.5 67 73.1
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 9.9e-23 110.2 80 67.5
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 1.3e-22 109.8 84 67.9
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 1.7e-22 109.4 82 59.8
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 3.8e-22 108.2 84 63.1
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 4.9e-22 107.8 81 61.7
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 1.4e-21 106.3 81 64.2
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 5.4e-21 104.4 84 64.3
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 7.1e-21 104.0 84 61.9
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 9.2e-21 103.6 84 64.3
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 1.2e-20 103.2 81 63.0
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.6e-20 102.8 84 60.7
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 2.7e-20 102.1 80 67.5
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 3.5e-20 101.7 83 61.4
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 7.8e-20 100.5 80 63.8
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 7.8e-20 100.5 83 63.9
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 1.0e-19 100.1 91 48.4
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 3.3e-18 95.1 89 50.6
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 9.6e-18 93.6 97 51.5
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-15 86.7 83 50.6
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 3.8e-14 81.6 84 52.4
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 6.4e-14 80.9 78 55.1
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 3.9e-11 71.6 42 81.0
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.5e-10 69.7 42 78.6
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 1.6e-09 66.2 86 46.5


User provided reference genes

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