Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 0.0e+00 1146.7 596 100.0
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.0e-261 905.6 541 89.5
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 2.5e-118 430.3 518 52.1
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 5.2e-108 396.0 555 47.0
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 7.1e-65 252.7 563 40.9
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 2.5e-41 174.5 537 32.0
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 4.8e-29 133.7 566 28.6
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 2.2e-18 98.2 307 28.0
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 4.2e-17 94.0 205 30.2
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 1.2e-16 92.4 139 37.4
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 2.1e-16 91.7 200 31.0
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 6.1e-16 90.1 124 40.3
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.8e-15 88.6 569 23.7
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 3.0e-15 87.8 119 42.0
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 1.5e-14 85.5 121 37.2
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.6e-14 84.7 159 36.5
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 2.6e-14 84.7 349 28.4
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 2.6e-14 84.7 117 36.8
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 2.6e-14 84.7 235 31.5
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 5.7e-14 83.6 120 38.3
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.3e-13 82.4 172 32.0
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.7e-13 82.0 151 35.1
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.7e-13 82.0 159 35.2
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 2.8e-13 81.3 137 36.5
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 4.9e-13 80.5 231 30.7
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 4.9e-13 80.5 204 29.4
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 6.3e-13 80.1 117 37.6
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 8.3e-13 79.7 114 41.2
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 1.1e-12 79.3 570 23.0
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.4e-12 79.0 118 37.3
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 1.8e-12 78.6 160 33.8
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 3.1e-12 77.8 143 35.7
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 3.1e-12 77.8 470 24.3
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 7.0e-12 76.6 373 26.3
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 1.2e-11 75.9 107 41.1
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.6e-11 75.5 117 35.9
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 2.7e-11 74.7 150 36.0
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.5e-11 74.3 180 31.1
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 4.5e-11 73.9 197 33.5
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 5.9e-11 73.6 581 21.3
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 7.7e-11 73.2 176 30.1
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 7.7e-11 73.2 112 39.3
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.7e-10 72.0 208 30.8
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 1.7e-10 72.0 215 30.2
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 2.9e-10 71.2 138 34.8
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 2.9e-10 71.2 453 24.9
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 3.8e-10 70.9 134 33.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 3.8e-10 70.9 200 27.5
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 5.0e-10 70.5 340 24.7
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 5.0e-10 70.5 127 37.8
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 5.0e-10 70.5 108 37.0
Ah.02g121090 Amaranthus hybridus HOM05D021336 ORTHO05D009536 6.6e-10 70.1 115 43.5
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 6.6e-10 70.1 168 33.3
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 6.6e-10 70.1 141 35.5
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 8.6e-10 69.7 480 24.8
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.1e-09 69.3 114 34.2
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 1.5e-09 68.9 180 30.6
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 2.5e-09 68.2 377 26.3
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.5e-09 68.2 82 40.2
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 2.5e-09 68.2 436 24.3
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 3.3e-09 67.8 188 29.3
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 5.6e-09 67.0 118 37.3
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 5.6e-09 67.0 581 23.8
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 7.2e-09 66.6 188 29.3
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 7.2e-09 66.6 190 27.9
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 9.5e-09 66.2 197 27.9
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 1.6e-08 65.5 123 33.3
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 6.1e-08 63.5 122 34.4
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.0e-08 63.2 188 29.3
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 8.0e-08 63.2 160 28.8
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 8.0e-08 63.2 193 28.0
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 1.0e-07 62.8 91 40.7
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 2.3e-07 61.6 378 25.1
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.0e-07 60.8 188 27.1
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 4.0e-07 60.8 188 27.7
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 6.8e-07 60.1 310 24.5
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 8.9e-07 59.7 167 29.3
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.2e-06 59.3 77 39.0
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 1.5e-06 58.9 78 42.3
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 2.0e-06 58.5 157 29.9
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 9.8e-06 56.2 94 33.0


User provided reference genes

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