Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2732.6 1384 100.0
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2725.3 1384 99.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2612.0 1384 94.4
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2519.6 1384 91.1
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2509.9 1384 90.2
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2505.3 1384 90.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1384 89.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2501.1 1384 89.5
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1385 90.0
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2498.8 1385 89.5
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2490.7 1385 89.0
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1384 89.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1385 89.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1386 89.3
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2485.3 1382 89.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1385 89.0
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1384 89.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1384 88.9
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2478.7 1384 88.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1388 89.1
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1385 89.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1388 89.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1385 89.2
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1385 88.9
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1384 88.5
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1385 88.8
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1385 88.9
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1384 88.2
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1384 88.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1400 88.3
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1385 88.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1385 89.0
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1384 88.4
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2470.3 1384 88.6
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2469.1 1387 88.7
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1384 89.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1384 88.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1385 88.5
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1384 88.5
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1384 88.3
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1385 88.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1384 88.3
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1384 88.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2460.3 1385 87.9
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2460.3 1383 88.1
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2459.1 1384 88.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2458.7 1384 88.2
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2458.7 1384 88.1
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2458.3 1386 87.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2456.0 1384 88.1
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2455.2 1385 88.2
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2454.5 1384 87.9
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2452.6 1385 87.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1385 87.2
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1385 87.8
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2443.7 1385 87.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2442.2 1384 87.3
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2441.8 1384 87.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1384 87.5
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2440.2 1398 86.7
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1384 87.3
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1384 87.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1384 87.3
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2436.0 1384 86.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2434.4 1386 87.8
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2432.5 1384 87.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2431.8 1385 87.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1446 83.9
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2429.4 1387 87.5
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2427.1 1411 85.8
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2427.1 1385 86.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2426.0 1387 86.7
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2423.7 1385 87.5
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1389 87.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1385 87.1
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1384 87.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2416.7 1395 86.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1384 87.5
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2414.8 1385 86.9
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2412.5 1385 86.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1335 89.0
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1386 86.6
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1386 86.6
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1385 86.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1353 88.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2404.8 1385 86.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2403.2 1385 86.6
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2402.9 1385 85.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2400.9 1385 85.4
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2374.4 1384 85.5
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2336.6 1386 84.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1389 83.7
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2311.2 1385 83.3
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1384 83.5
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1343 83.7
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2286.9 1410 82.1
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2267.3 1263 90.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2263.8 1328 83.4
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2254.2 1259 89.5
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2238.0 1260 87.9
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2189.8 1336 79.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2183.3 1332 80.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2177.9 1347 81.6
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1336 79.9
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1336 79.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2171.7 1331 79.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2146.7 1350 76.9
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1978.4 1382 75.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1971.8 1122 87.1
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1952.9 1110 87.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1890.2 1331 69.8
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1879.4 1402 71.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1849.3 1334 68.6
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1727.2 913 93.5
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1689.9 914 90.8
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1641.3 896 91.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1491.1 808 90.8
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1488.8 809 90.5
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1147.5 690 82.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1102.4 671 82.3
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.0e-300 1037.3 665 80.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.6e-293 1013.4 571 86.0
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.3e-262 909.4 1199 44.0
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 7.0e-257 891.7 592 76.9
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.2e-225 786.6 472 83.3
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.6e-224 784.3 474 83.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.1e-220 770.0 472 81.4
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 4.2e-217 759.6 473 81.6
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.5e-201 707.2 398 86.9
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.5e-179 634.8 1400 32.4
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 9.4e-161 572.4 1470 30.6
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.3e-109 402.5 1273 28.1
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.8e-90 339.0 175 95.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 8.8e-66 256.9 160 79.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 6.5e-61 240.7 123 94.3
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.5e-46 191.4 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.7e-38 165.6 174 54.6
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.9e-29 135.2 138 50.0
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 4.7e-27 128.3 99 66.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 5.2e-26 124.8 91 69.2
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.1e-19 102.8 61 82.0


User provided reference genes

Program Settings