Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.4e-59 232.6 113 100.0
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 4.2e-59 231.1 113 99.1
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.5e-51 204.1 114 88.6
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 6.1e-50 200.7 113 90.3
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.5e-48 196.1 114 85.1
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 4.1e-46 188.0 113 78.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.9e-44 181.8 117 76.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 5.0e-44 181.0 115 76.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.5e-44 180.6 120 75.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.5e-44 180.6 120 75.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 6.5e-44 180.6 114 77.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.9e-43 179.1 113 77.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 2.5e-43 178.7 119 75.6
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-42 176.4 107 77.6
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.6e-42 176.0 115 75.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.7e-42 175.3 114 76.3
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.6e-42 174.9 112 73.2
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.1e-42 174.1 112 71.4
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.1e-42 174.1 98 82.7
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 8.0e-42 173.7 106 77.4
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.4e-41 172.9 107 76.6
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.8e-41 172.6 111 73.9
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.8e-41 172.6 105 78.1
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.3e-41 172.2 107 75.7
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.3e-41 172.2 106 76.4
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.3e-41 172.2 107 74.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.0e-41 171.8 108 75.0
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.0e-41 171.4 115 73.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.2e-40 169.9 114 71.1
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.2e-40 169.9 105 76.2
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.6e-40 168.7 105 78.1
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.4e-40 168.3 105 75.2
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.4e-40 168.3 105 75.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.4e-40 167.9 99 76.8
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.5e-40 167.2 101 77.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 9.8e-40 166.8 115 73.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.3e-39 166.4 116 71.6
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.3e-39 166.4 97 79.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.3e-39 166.4 110 73.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.7e-39 166.0 101 76.2
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.7e-39 166.0 100 73.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.2e-39 165.6 112 72.3
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.2e-39 165.6 101 74.3
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.7e-39 164.9 110 72.7
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 4.8e-39 164.5 103 74.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 4.8e-39 164.5 101 75.2
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 4.8e-39 164.5 113 68.1
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 6.3e-39 164.1 95 81.1
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 6.3e-39 164.1 101 77.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 8.3e-39 163.7 101 77.2
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.3e-39 163.7 107 71.0
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 101 77.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.4e-38 162.9 92 80.4
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.4e-38 162.9 103 72.8
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.8e-38 162.5 111 72.1
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.8e-38 162.5 96 79.2
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.4e-38 162.2 107 72.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.4e-38 162.2 108 72.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.4e-38 162.2 99 72.7
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.1e-38 161.8 107 72.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.1e-38 161.8 99 75.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.1e-38 161.8 96 78.1
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 4.1e-38 161.4 99 76.8
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.4e-38 161.0 107 69.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.0e-38 160.6 110 71.8
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.0e-38 160.6 101 76.2
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 9.1e-38 160.2 93 79.6
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 9.1e-38 160.2 91 80.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 9.1e-38 160.2 112 67.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 9.1e-38 160.2 105 75.2
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.0e-37 159.1 85 83.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.0e-37 159.1 85 83.5
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.5e-37 158.3 85 83.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 85 83.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 109 67.9
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-37 158.3 109 67.9
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 5.9e-37 157.5 106 67.9
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 7.7e-37 157.1 107 70.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-36 156.8 85 82.4
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.0e-36 156.8 97 73.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.0e-36 156.8 101 72.3
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.0e-36 156.8 101 70.3
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 85 83.5
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 117 65.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.7e-36 156.0 107 70.1
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.7e-36 156.0 109 67.0
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-36 155.6 113 64.6
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.2e-36 155.6 107 67.3
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.2e-36 155.6 113 65.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 3.8e-36 154.8 106 70.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 3.8e-36 154.8 100 73.0
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.0e-36 154.5 107 69.2
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.5e-36 154.1 106 67.9
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.5e-36 154.1 112 65.2
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 8.5e-36 153.7 111 67.6
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 8.5e-36 153.7 103 69.9
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.1e-35 153.3 112 62.5
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.1e-35 153.3 105 70.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-35 153.3 109 67.9
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.5e-35 152.9 95 73.7
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-35 152.1 114 64.9
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.2e-35 151.8 119 64.7
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.2e-35 151.8 114 64.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-35 151.8 114 64.9
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.2e-35 151.8 114 64.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 3.2e-35 151.8 114 64.9
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.2e-35 151.4 104 67.3
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.2e-35 151.4 104 67.3
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.5e-35 151.0 115 62.6
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 5.5e-35 151.0 100 69.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 9.5e-35 150.2 97 71.1
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.2e-34 149.8 82 80.5
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.2e-34 149.8 112 61.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.1e-34 149.1 96 70.8
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.8e-34 148.7 97 73.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.6e-34 148.3 112 60.7
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-34 147.9 111 62.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-34 147.9 111 62.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 4.7e-34 147.9 115 61.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.1e-34 147.5 112 61.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 6.1e-34 147.5 103 65.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.0e-34 147.1 116 62.9
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 8.0e-34 147.1 105 66.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 8.0e-34 147.1 105 66.7
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 8.0e-34 147.1 105 66.7
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 8.0e-34 147.1 107 64.5
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 8.0e-34 147.1 112 60.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.0e-33 146.7 116 62.1
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.0e-33 146.7 116 62.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.4e-33 146.4 103 64.1
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.4e-33 146.4 102 69.6
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.0e-33 145.2 95 69.5
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 5.2e-33 144.4 107 60.7
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 6.8e-33 144.1 112 60.7
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 6.8e-33 144.1 116 57.8
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.8e-33 144.1 80 76.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.4e-32 141.4 106 65.1
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.7e-31 138.3 106 65.1
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.2e-30 133.7 117 57.3
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.2e-29 133.3 112 55.4
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 6.6e-28 127.5 81 72.8
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.0e-25 120.2 111 55.0
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-24 116.3 62 82.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.5e-24 116.3 104 54.8
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.2e-21 106.7 106 50.9
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.6e-21 106.3 85 57.6
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.5e-21 105.1 78 70.5
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 4.6e-21 104.8 94 56.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.3e-20 103.2 62 77.4
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.2e-16 90.1 72 58.3
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.6e-16 89.0 51 78.4
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 8.3e-15 84.0 73 49.3
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 7.8e-13 77.4 97 46.4
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.3e-12 75.9 65 55.4
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.0e-08 62.8 49 57.1
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 3.7e-07 58.5 42 69.0


User provided reference genes

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