Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 9.0e-87 323.6 163 100.0
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 4.9e-85 317.8 163 98.8
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 8.2e-80 300.4 163 89.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.5e-76 287.7 162 85.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 157 84.7
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.6e-72 276.2 157 82.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.6e-72 276.2 159 84.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.2e-72 275.8 163 84.7
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.7e-69 266.2 155 81.3
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.7e-69 266.2 155 81.3
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.8e-69 265.0 157 79.0
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.0e-69 264.6 154 81.2
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 5.0e-69 264.6 157 77.7
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 5.0e-69 264.6 157 78.3
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.5e-68 262.3 156 79.5
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 3.2e-68 261.9 156 78.2
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.2e-68 261.9 156 78.8
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 3.2e-68 261.9 156 79.5
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 4.2e-68 261.5 154 81.2
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.5e-68 261.2 156 79.5
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 7.2e-68 260.8 155 79.4
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 7.2e-68 260.8 154 81.8
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 9.4e-68 260.4 156 78.2
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 9.4e-68 260.4 156 78.2
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.2e-67 260.0 156 77.6
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.2e-67 260.0 160 77.5
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.1e-67 259.2 157 77.1
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 76.9
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 3.6e-67 258.5 154 80.5
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 4.6e-67 258.1 155 77.4
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 7.9e-67 257.3 154 77.9
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 7.9e-67 257.3 153 79.7
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 77.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.4e-66 256.5 151 80.1
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-66 256.5 154 79.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.4e-66 256.5 158 77.2
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.3e-66 255.8 154 77.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.3e-66 255.8 154 77.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.0e-66 255.4 155 76.1
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.0e-66 255.4 155 76.8
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 5.1e-66 254.6 155 76.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 6.7e-66 254.2 151 79.5
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.7e-66 254.2 157 74.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 157 73.2
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.5e-65 253.1 156 76.3
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.3e-65 251.9 160 73.1
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 4.3e-65 251.5 154 76.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 7.4e-65 250.8 151 77.5
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 7.4e-65 250.8 152 77.6
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 7.4e-65 250.8 155 76.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.7e-64 249.6 151 77.5
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.7e-64 249.6 155 77.4
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.2e-64 249.2 154 76.6
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.7e-64 248.4 154 76.0
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 3.7e-64 248.4 156 76.9
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 4.8e-64 248.1 155 76.8
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 8.2e-64 247.3 155 75.5
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.1e-63 246.9 153 75.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.8e-63 246.1 151 77.5
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 154 76.6
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 156 75.0
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 156 75.0
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.4e-63 245.7 154 76.6
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.1e-63 245.4 154 74.0
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.1e-63 245.0 154 74.7
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 9.1e-63 243.8 160 73.8
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 140 82.9
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.2e-62 243.4 155 73.5
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 151 76.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.5e-62 243.0 161 70.8
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.5e-62 243.0 154 73.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.0e-62 242.7 150 76.0
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 72.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 72.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 72.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 72.3
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.4e-62 241.9 158 72.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.4e-62 241.9 151 76.2
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 4.5e-62 241.5 150 75.3
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.5e-62 241.5 160 73.1
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.9e-62 241.1 154 73.4
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 5.9e-62 241.1 155 74.8
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.9e-62 241.1 151 76.2
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.0e-61 240.4 154 74.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.7e-61 239.6 156 73.7
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 156 72.4
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.9e-61 238.8 156 72.4
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-61 238.8 156 72.4
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.9e-61 238.8 156 72.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 3.8e-61 238.4 156 73.1
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.0e-61 238.0 156 71.8
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.5e-61 237.7 151 74.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.1e-60 236.9 156 71.2
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.4e-60 236.5 154 71.4
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.9e-60 236.1 153 72.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 9.4e-60 233.8 157 69.4
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.1e-59 232.6 156 70.5
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 4.7e-59 231.5 150 73.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.8e-58 229.6 157 70.1
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.9e-58 228.4 158 68.4
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 5.1e-58 228.0 155 72.3
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 5.1e-58 228.0 155 72.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.1e-57 226.9 159 71.1
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.5e-57 226.5 206 56.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.3e-57 225.3 143 75.5
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.7e-56 223.0 151 68.9
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.8e-55 219.5 136 75.7
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.8e-55 219.5 241 50.2
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.4e-55 219.2 146 69.2
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.4e-55 219.2 146 70.5
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.7e-53 213.0 141 73.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.2e-52 207.6 125 78.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-51 206.8 155 65.8
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.8e-50 203.0 123 77.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.6e-49 199.1 156 61.5
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.1e-47 193.7 199 50.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.4e-47 193.4 157 60.5
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.3e-45 186.8 144 67.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 5.0e-45 184.9 296 39.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.5e-44 182.6 107 78.5
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 5.5e-44 181.4 112 72.3
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.4e-42 176.8 184 51.1
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 9.4e-36 154.1 97 78.4
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 4.7e-35 151.8 99 72.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 2.3e-34 149.4 110 66.4
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 5.7e-33 144.8 133 54.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 9.8e-33 144.1 150 49.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.7e-30 134.4 149 47.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.0
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.8e-29 132.1 123 56.1
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-29 131.7 146 54.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.2e-27 127.1 144 43.8
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 6.8e-26 121.3 77 71.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.0e-25 119.8 132 46.2
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.6e-25 119.4 137 46.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.5e-22 109.0 76 68.4
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 107 57.0
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 107 57.0
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-20 104.0 65 73.8
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-20 103.6 65 73.8
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-20 103.6 101 57.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.5e-20 103.6 133 41.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.8e-19 99.4 64 73.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.0e-18 95.5 64 70.3
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-16 90.1 78 59.0
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 7.3e-12 74.7 147 38.1
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 7.5e-09 64.7 141 29.8
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.3e-08 63.9 80 47.5
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 6.4e-08 61.6 69 47.8
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 4.6e-06 55.5 43 65.1


User provided reference genes

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