Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.6e-206 722.6 391 100.0
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 9.1e-186 653.7 391 88.5
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 4.3e-87 325.9 384 50.5
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 2.0e-79 300.4 315 56.5
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.4e-37 161.4 262 42.7
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.8e-24 117.9 215 39.5
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 2.3e-24 117.5 197 38.6
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.2e-24 116.3 168 41.7
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 6.8e-24 115.9 168 42.3
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.2e-23 115.2 205 39.5
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.5e-23 114.8 196 40.3
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 2.0e-23 114.4 168 41.7
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 4.4e-23 113.2 193 36.3
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.8e-23 112.8 216 38.4
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 9.9e-23 112.1 186 39.2
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.3e-22 111.7 163 45.4
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 2.2e-22 110.9 238 36.6
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.9e-22 110.5 210 39.0
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 3.8e-22 110.2 195 35.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.8e-22 110.2 161 44.7
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 6.4e-22 109.4 183 40.4
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 6.4e-22 109.4 183 40.4
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 8.4e-22 109.0 223 34.5
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 1.1e-21 108.6 188 39.9
EL10Ac4g08760 Beta vulgaris HOM05D005305 ORTHO05D006394 1.9e-21 107.8 83 62.7
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 9.2e-21 105.5 153 41.8
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.6e-20 104.8 205 36.1
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 2.1e-20 104.4 154 42.9
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 6.0e-20 102.8 240 32.1
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.7e-19 101.3 164 42.7
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 3.0e-19 100.5 225 36.0
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.9e-19 100.1 255 31.0
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 3.9e-19 100.1 222 33.8
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 3.9e-19 100.1 259 34.4
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 5.1e-19 99.8 225 36.0
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 5.1e-19 99.8 222 34.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 5.1e-19 99.8 230 35.2
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 6.6e-19 99.4 257 33.5
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 6.6e-19 99.4 257 33.5
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 6.6e-19 99.4 153 39.2
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 6.6e-19 99.4 153 39.2
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 8.6e-19 99.0 216 33.8
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 8.6e-19 99.0 225 35.6
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.1e-18 98.6 225 35.6
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 1.1e-18 98.6 200 33.5
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.1e-18 98.6 172 39.0
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 1.9e-18 97.8 251 32.3
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.9e-18 97.8 155 38.1
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 2.5e-18 97.4 216 32.9
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 3.3e-18 97.1 267 30.7
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 5.6e-18 96.3 252 33.3
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 7.3e-18 95.9 186 35.5
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 7.3e-18 95.9 225 35.6
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 7.3e-18 95.9 225 35.6
AUR62035926 Chenopodium quinoa HOM05D001040 ORTHO05D002311 7.3e-18 95.9 100 57.0
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 9.6e-18 95.5 273 30.8
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.2e-17 95.1 263 32.3
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 1.6e-17 94.7 182 34.6
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.6e-17 94.7 190 36.3
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.1e-17 94.4 178 34.8
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 2.8e-17 94.0 252 32.5
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 3.6e-17 93.6 221 34.8
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 4.7e-17 93.2 161 37.9
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 4.7e-17 93.2 185 35.1
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.7e-17 93.2 163 41.1
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 4.7e-17 93.2 261 28.4
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 4.7e-17 93.2 164 36.0
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 6.2e-17 92.8 161 39.8
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 6.2e-17 92.8 228 30.7
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 8.1e-17 92.4 214 34.1
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-16 91.3 215 32.6
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 1.8e-16 91.3 215 32.6
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 1.8e-16 91.3 215 32.6
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.8e-16 91.3 235 34.5
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.8e-16 91.3 220 32.3
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 4.0e-16 90.1 229 33.6
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 4.0e-16 90.1 182 35.2
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 5.2e-16 89.7 205 34.1
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 5.2e-16 89.7 154 36.4
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 8.9e-16 89.0 151 37.1
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 8.9e-16 89.0 150 34.7
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.2e-15 88.6 149 34.9
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 1.2e-15 88.6 261 32.2
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.5e-15 88.2 259 31.7
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.5e-15 88.2 186 33.3
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.0e-15 87.8 226 33.2
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 2.6e-15 87.4 156 36.5
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 3.4e-15 87.0 205 34.1
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 3.4e-15 87.0 238 32.4
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 3.4e-15 87.0 151 37.1
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 4.4e-15 86.7 219 33.8
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 4.4e-15 86.7 239 28.5
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 4.4e-15 86.7 220 32.7
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 7.6e-15 85.9 167 38.3
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 3.8e-14 83.6 185 34.1
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 3.8e-14 83.6 210 34.3
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 6.4e-14 82.8 211 31.8
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.4e-13 81.6 235 33.6
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.4e-13 81.6 164 35.4
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.9e-13 81.3 159 35.8
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 4.2e-13 80.1 169 34.3
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 4.2e-13 80.1 169 33.7
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 1.2e-12 78.6 88 51.1
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-12 77.8 264 30.3
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 2.7e-12 77.4 144 36.8
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 4.6e-12 76.6 131 42.0
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 6.0e-12 76.3 259 29.7
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.9e-10 71.2 206 32.0
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 5.6e-10 69.7 172 33.7
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.6e-09 68.2 172 33.1
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 9.0e-08 62.4 172 32.0
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.2e-07 62.0 95 40.0
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 1.5e-07 61.6 110 37.3
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-07 61.2 69 46.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 2.0e-07 61.2 118 37.3
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.4e-07 60.5 66 43.9
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 3.4e-07 60.5 69 47.8
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 4.5e-07 60.1 135 34.1
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 4.5e-07 60.1 69 46.4
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.5e-07 60.1 98 37.8
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 4.5e-07 60.1 97 32.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 4.5e-07 60.1 98 34.7
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 5.8e-07 59.7 73 43.8
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 7.6e-07 59.3 69 44.9
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 7.6e-07 59.3 69 44.9
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 7.6e-07 59.3 69 44.9
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.6e-07 59.3 109 35.8
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 7.6e-07 59.3 134 28.4
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 9.9e-07 58.9 69 44.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 9.9e-07 58.9 69 43.5
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 9.9e-07 58.9 69 43.5
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 9.9e-07 58.9 73 42.5
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 9.9e-07 58.9 97 34.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 9.9e-07 58.9 125 29.6
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 9.9e-07 58.9 148 27.0
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 9.9e-07 58.9 82 39.0
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-06 58.5 69 44.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.3e-06 58.5 69 44.9
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.3e-06 58.5 97 38.1
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.3e-06 58.5 131 31.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.7e-06 58.2 69 44.9
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 1.7e-06 58.2 97 38.1
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.7e-06 58.2 101 32.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.7e-06 58.2 101 32.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 2.2e-06 57.8 69 43.5
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.2e-06 57.8 99 34.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 2.2e-06 57.8 108 34.3
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.9e-06 57.4 92 39.1
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.9e-06 57.4 103 30.1
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.8e-06 57.0 69 43.5
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.8e-06 57.0 179 31.3
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.8e-06 57.0 179 31.3
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.8e-06 57.0 179 31.3
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.8e-06 57.0 179 31.3
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.8e-06 57.0 72 40.3
Nn1g04620 Nelumbo nucifera HOM05D005305 ORTHO05D006394 3.8e-06 57.0 97 40.2
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.9e-06 56.6 109 31.2
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 4.9e-06 56.6 97 33.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.9e-06 56.6 132 30.3
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.9e-06 56.6 69 42.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 8.4e-06 55.8 69 39.1
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 8.4e-06 55.8 99 33.3
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.4e-06 55.8 97 34.0
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 8.4e-06 55.8 149 26.2


User provided reference genes

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