Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 2.0e-69 265.8 144 100.0
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 9.2e-43 177.2 100 97.0
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 6.2e-39 164.5 104 83.7
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 1.7e-36 156.4 104 80.8
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.4e-36 154.5 104 84.6
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.6e-33 144.4 104 76.9
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 1.5e-32 143.3 104 75.0
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.2e-31 140.2 109 72.5
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 2.4e-30 136.0 107 69.2
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 4.0e-30 135.2 101 73.3
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 5.2e-30 134.8 104 71.2
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 8.9e-30 134.0 105 71.4
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 1.2e-29 133.7 107 68.2
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 9.9e-29 130.6 104 67.3
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 1.3e-28 130.2 101 71.3
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 1.7e-28 129.8 104 68.3
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 2.2e-28 129.4 110 64.5
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.9e-28 129.0 105 70.5
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 3.8e-28 128.6 106 65.1
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 3.8e-28 128.6 108 64.8
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 4.9e-28 128.3 108 68.5
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 4.9e-28 128.3 107 66.4
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 6.4e-28 127.9 110 66.4
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.1e-27 127.1 112 63.4
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 1.1e-27 127.1 108 68.5
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.4e-27 126.7 95 70.5
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 1.4e-27 126.7 95 70.5
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 3.2e-27 125.6 107 70.1
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 4.1e-27 125.2 106 66.0
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 7.1e-27 124.4 103 68.0
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 7.1e-27 124.4 109 67.0
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 9.2e-27 124.0 121 59.5
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.2e-26 123.6 107 69.2
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.2e-26 123.6 106 65.1
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.2e-26 123.6 109 67.9
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.6e-26 123.2 108 64.8
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 2.1e-26 122.9 119 61.3
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 2.1e-26 122.9 108 65.7
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 2.7e-26 122.5 104 67.3
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 2.7e-26 122.5 110 65.5
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 2.7e-26 122.5 108 67.6
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 3.5e-26 122.1 105 66.7
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.5e-26 122.1 112 66.1
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 3.5e-26 122.1 95 68.4
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 4.6e-26 121.7 106 64.2
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 6.0e-26 121.3 103 64.1
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 6.0e-26 121.3 112 66.1
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 7.8e-26 120.9 105 68.6
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 1.0e-25 120.6 107 63.6
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.0e-25 120.6 110 67.3
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 1.3e-25 120.2 79 77.2
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 1.3e-25 120.2 110 67.3
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.3e-25 120.2 108 62.0
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 2.3e-25 119.4 104 65.4
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 2.3e-25 119.4 110 63.6
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 3.0e-25 119.0 98 68.4
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 3.0e-25 119.0 110 65.5
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.0e-25 119.0 107 63.6
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 3.9e-25 118.6 104 67.3
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.9e-25 118.6 107 64.5
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 5.1e-25 118.2 110 63.6
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 6.6e-25 117.9 89 70.8
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 6.6e-25 117.9 88 71.6
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 1.1e-24 117.1 108 62.0
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 1.5e-24 116.7 110 62.7
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 1.9e-24 116.3 110 61.8
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 2.5e-24 115.9 104 61.5
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 3.3e-24 115.5 84 72.6
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 3.3e-24 115.5 108 62.0
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 7.3e-24 114.4 110 63.6
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 7.3e-24 114.4 104 62.5
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 9.6e-24 114.0 110 60.0
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.2e-23 113.6 104 63.5
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 1.6e-23 113.2 104 62.5
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.6e-23 113.2 100 65.0
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 1.6e-23 113.2 100 65.0
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 1.6e-23 113.2 104 61.5
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.6e-23 113.2 102 60.8
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 113.2 87 71.3
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.6e-23 113.2 104 63.5
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 2.1e-23 112.8 84 71.4
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.8e-23 112.5 91 69.2
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.8e-23 112.5 91 69.2
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.6e-23 112.1 85 72.9
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.6e-23 112.1 91 69.2
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 4.7e-23 111.7 104 57.7
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 6.2e-23 111.3 103 62.1
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 6.2e-23 111.3 78 73.1
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 6.2e-23 111.3 93 67.7
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 8.1e-23 110.9 109 59.6
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 8.1e-23 110.9 109 59.6
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 8.1e-23 110.9 86 70.9
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.1e-23 110.9 82 74.4
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.1e-23 110.9 82 74.4
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-22 110.5 100 65.0
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 2.4e-22 109.4 104 61.5
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 2.4e-22 109.4 104 61.5
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 2.4e-22 109.4 104 61.5
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 2.4e-22 109.4 97 63.9
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.1e-22 109.0 94 66.0
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 3.1e-22 109.0 104 62.5
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.0e-22 108.6 83 72.3
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 5.2e-22 108.2 107 58.9
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 5.2e-22 108.2 103 64.1
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 9.0e-22 107.5 110 59.1
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 9.0e-22 107.5 75 76.0
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 9.0e-22 107.5 110 60.9
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 1.2e-21 107.1 104 60.6
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 54.2
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 2.6e-21 105.9 104 59.6
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 2.6e-21 105.9 104 59.6
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 2.6e-21 105.9 104 59.6
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 3.4e-21 105.5 102 59.8
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 4.4e-21 105.1 99 59.6
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 4.4e-21 105.1 104 59.6
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 4.4e-21 105.1 110 59.1
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 5.8e-21 104.8 106 57.5
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 7.6e-21 104.4 104 59.6
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 9.9e-21 104.0 104 58.7
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 9.9e-21 104.0 104 58.7
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 9.9e-21 104.0 78 69.2
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.3e-20 103.6 104 58.7
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.7e-20 103.2 114 50.0
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 2.2e-20 102.8 104 58.7
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 4.2e-19 98.6 79 68.4
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 1.6e-18 96.7 109 54.1
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 1.6e-18 96.7 93 55.9
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 2.1e-18 96.3 76 64.5
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.7e-18 95.9 109 54.1
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 2.7e-18 95.9 82 63.4
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 2.7e-18 95.9 78 65.4
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 1.0e-17 94.0 93 54.8
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 2.5e-16 89.4 86 58.1
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.3e-16 88.6 70 71.4
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 2.8e-15 85.9 102 57.8
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 5.4e-11 71.6 92 50.0
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 2.1e-10 69.7 57 71.9
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 8.7e-09 64.3 53 67.9
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 3.3e-08 62.4 49 65.3
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-06 57.4 44 70.5
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 9.0e-06 54.3 64 45.3


User provided reference genes

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