Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1683.7 838 100.0
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1566.2 838 94.2
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1553.1 838 90.9
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1513.8 870 86.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1432.2 841 83.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1401.3 838 82.3
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1395.6 838 81.9
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1395.6 838 82.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1386.7 838 81.5
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1381.7 838 81.1
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 838 81.0
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 837 81.4
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1375.9 838 80.8
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1375.1 838 80.7
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 838 79.7
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 838 80.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1365.1 830 81.3
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 868 79.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 838 80.1
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 80.1
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1358.6 838 80.1
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1357.8 826 81.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1354.3 840 79.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 838 80.0
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 838 79.2
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 838 79.8
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 79.7
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 838 79.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 858 79.0
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 764 85.7
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 839 78.7
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 838 79.5
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 838 78.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 915 74.8
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1344.3 838 79.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 78.5
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 80.0
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 838 79.1
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 839 77.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 839 77.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 840 78.9
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1336.2 838 78.3
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 844 79.0
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 838 77.6
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 838 77.4
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 838 77.8
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 838 78.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 839 77.6
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 838 77.3
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 838 78.4
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 845 78.2
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1331.6 838 78.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 77.1
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 858 77.7
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 838 79.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 838 77.1
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 845 76.8
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 838 77.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 840 78.1
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 845 76.7
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 967 70.2
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 839 78.4
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 839 77.9
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 845 76.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 838 76.6
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 839 77.4
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 838 77.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 838 77.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 840 77.3
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 839 77.0
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 911 72.9
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 843 75.9
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 839 76.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1291.9 838 76.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 839 76.6
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 838 75.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 867 74.2
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 904 71.3
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1276.2 851 75.7
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1270.4 781 78.9
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1265.4 911 70.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1259.2 826 75.4
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1251.5 838 74.6
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1247.3 825 75.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1241.1 765 79.5
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1237.6 842 74.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1232.6 766 78.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1216.1 751 80.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1211.4 842 73.6
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1203.7 839 70.6
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1199.9 838 72.4
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1198.0 839 72.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 858 68.5
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1193.7 788 75.8
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 776 76.2
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1187.9 817 71.1
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 838 70.5
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1142.5 844 67.4
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1130.2 748 73.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1124.8 686 81.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1119.8 852 65.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1114.8 839 68.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1101.3 840 65.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1100.1 697 77.5
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1079.3 850 64.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 4.5e-307 1057.7 654 79.5
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 7.0e-284 980.7 845 63.3
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.2e-252 875.5 642 70.4
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.0e-238 829.7 542 75.3
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 9.9e-222 774.2 513 74.9
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.8e-202 710.3 418 82.1
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.4e-159 567.8 329 83.3
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.1e-119 433.3 307 68.7
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 3.9e-117 426.8 300 73.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.1e-114 418.7 254 80.7
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.4e-111 407.5 285 71.2
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 4.3e-92 343.6 196 83.7
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.6e-86 323.6 263 64.3
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 9.6e-84 315.8 388 47.7
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 8.2e-67 259.6 182 73.1
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 2.6e-65 254.6 275 52.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.0e-54 216.5 139 77.7
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-48 199.1 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.4e-42 178.3 117 76.9
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.8e-35 154.8 94 79.8
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 7.8e-33 146.7 168 51.2
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.3e-32 145.2 83 81.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 8.9e-29 133.3 103 64.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 6.4e-27 127.1 82 79.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.7e-24 119.0 76 75.0
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 3.0e-24 118.2 74 75.7
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.5e-23 115.2 84 66.7
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 5.2e-21 107.5 68 73.5
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.1e-18 99.8 75 68.0
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 3.9e-16 91.3 106 57.5
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 9.2e-10 70.1 50 64.0
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.2e-10 70.1 42 85.7
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 5.6e-07 60.8 83 37.3
Lsat_1_v5_gn_5_73601 Lactuca sativa HOM05D000051 ORTHO05D000015 3.6e-06 58.2 50 50.0


User provided reference genes

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