Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.1e-147 526.6 261 100.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.5e-104 383.3 215 90.7
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 5.1e-100 368.2 253 73.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 7.6e-96 354.4 262 70.2
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 7.9e-93 344.4 256 71.5
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.2e-74 283.1 263 58.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.4e-65 253.1 269 53.5
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 8.5e-63 244.6 270 52.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 9.7e-59 231.1 271 52.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.6e-53 213.8 267 48.3
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.1e-53 213.4 269 46.1
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.0e-53 211.5 270 48.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.0e-51 206.8 272 47.1
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.4e-51 206.1 268 47.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.2e-50 203.4 258 47.7
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.8e-50 203.0 272 48.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 4.8e-50 202.2 268 47.4
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-49 200.3 269 45.7
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 5.4e-49 198.7 269 45.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.0e-48 196.8 269 44.6
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 4.5e-48 195.7 269 45.0
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.0e-47 194.5 273 45.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-47 193.7 269 44.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.9e-47 193.0 278 42.4
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.8e-47 192.6 277 43.3
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.8e-47 192.6 267 48.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.8e-47 192.6 268 44.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 6.5e-47 191.8 271 45.0
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.9e-46 190.3 270 45.2
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.1e-45 186.8 271 43.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.1e-45 186.8 270 44.4
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.1e-45 186.8 308 41.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.1e-45 185.3 266 45.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.8e-44 183.7 272 44.5
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.8e-44 183.7 272 44.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 3.0e-44 183.0 246 47.6
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.8e-44 181.4 270 43.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.0e-43 180.3 272 43.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.4e-43 179.1 259 42.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-42 177.6 273 44.7
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.3e-42 177.6 235 47.7
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.2e-42 176.8 270 44.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.7e-42 176.0 253 44.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 4.9e-42 175.6 267 41.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.9e-42 175.6 275 44.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 4.9e-42 175.6 292 43.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.4e-41 174.1 260 44.2
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.4e-41 174.1 273 42.1
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-41 174.1 231 46.3
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.1e-41 172.9 212 48.1
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 5.4e-41 172.2 328 40.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.6e-40 170.6 263 43.7
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.0e-40 170.2 272 43.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.5e-40 169.5 372 36.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 4.5e-40 169.1 241 44.4
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.9e-40 168.7 263 43.7
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.0e-39 167.9 236 44.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.3e-39 167.5 275 42.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.9e-39 166.4 253 41.1
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 8.6e-39 164.9 271 42.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.9e-38 163.7 271 42.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.9e-38 163.7 249 44.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.3e-38 162.9 263 42.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.3e-38 162.5 214 48.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 4.3e-38 162.5 273 42.1
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 5.6e-38 162.2 234 43.2
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 9.5e-38 161.4 234 43.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.2e-37 161.0 272 41.9
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.6e-37 160.6 248 41.5
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 6.1e-37 158.7 268 42.5
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.4e-36 157.5 208 47.6
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.8e-36 157.1 270 40.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.0e-36 156.4 338 36.4
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.5e-35 154.1 266 41.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.5e-35 154.1 269 42.0
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.5e-35 154.1 226 43.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.6e-35 153.3 268 41.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-35 152.9 170 53.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.4e-35 152.9 387 34.1
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.4e-35 152.5 304 37.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.4e-35 152.5 221 45.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 5.7e-35 152.1 264 40.9
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.5e-35 151.8 264 40.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.7e-34 150.6 208 44.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.7e-34 150.6 273 40.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.2e-34 150.2 265 38.9
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 4.9e-34 149.1 272 40.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.4e-34 148.7 268 40.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 8.3e-34 148.3 275 38.5
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 8.3e-34 148.3 357 33.6
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.1e-33 147.9 304 37.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.6e-32 144.1 210 43.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 2.0e-32 143.7 237 42.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.6e-32 142.5 318 35.2
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.6e-32 142.5 318 35.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.9e-31 139.4 289 38.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 6.6e-31 138.7 268 36.2
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 7.3e-30 135.2 172 50.0
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.3e-30 135.2 277 37.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 9.5e-30 134.8 260 38.5
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-29 134.4 285 37.9
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.8e-29 133.3 260 37.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.8e-29 133.3 150 52.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 8.0e-29 131.7 306 35.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-28 130.6 262 39.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-27 127.9 160 49.4
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.5e-27 127.5 318 32.7
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-27 126.3 263 37.3
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.4e-27 126.3 260 37.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 7.5e-27 125.2 251 38.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-26 124.0 260 38.5
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 3.7e-26 122.9 264 36.4
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 8.3e-26 121.7 251 37.5
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 8.3e-26 121.7 251 37.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 8.3e-26 121.7 286 36.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-25 121.3 134 47.0
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.2e-25 119.8 251 37.1
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.5e-24 116.3 251 36.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.5e-24 116.3 272 34.2
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.5e-22 110.9 252 33.3
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.9e-22 110.5 271 32.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.5e-22 110.2 188 39.4
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 9.5e-22 108.2 280 33.2
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.2e-21 107.8 57 91.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.8e-21 106.7 186 42.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 3.6e-21 106.3 219 37.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.1e-20 104.8 277 35.0
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.8e-20 104.0 235 36.6
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 5.8e-19 99.0 263 33.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.4e-17 93.6 170 39.4
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 3.2e-17 93.2 262 32.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.4e-17 92.4 247 33.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.1e-16 90.5 154 38.3
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.7e-16 90.1 262 31.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 6.0e-16 89.0 264 29.5
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 9.5e-14 81.6 80 52.5
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 3.6e-13 79.7 87 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.7e-13 79.3 220 31.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.0e-12 76.3 219 29.7
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 2.9e-10 70.1 74 51.4
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 8.4e-10 68.6 108 36.1
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.5e-08 63.2 121 39.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 3.0e-07 60.1 152 31.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.5e-06 57.8 72 44.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.9e-06 57.4 89 41.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.6e-06 55.1 75 42.7


User provided reference genes

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