Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 5.3e-66 254.2 129 100.0
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 9.4e-55 216.9 121 91.7
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.9e-47 192.6 127 79.5
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 5.9e-41 171.0 127 69.3
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.2e-36 156.8 127 62.2
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 4.4e-36 154.8 132 59.8
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 5.7e-36 154.5 132 61.4
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.7e-35 152.9 130 66.2
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.8e-34 149.4 130 59.2
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 3.1e-34 148.7 123 61.0
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 5.4e-34 147.9 130 60.8
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 9.1e-34 147.1 131 58.8
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 3.5e-33 145.2 117 63.2
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 4.5e-33 144.8 136 57.4
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.3e-32 143.3 130 56.9
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 1.3e-32 143.3 130 55.4
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 2.3e-32 142.5 127 55.9
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 2.3e-32 142.5 136 56.6
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 2.3e-32 142.5 136 56.6
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.9e-32 142.1 131 58.0
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 5.0e-32 141.4 127 59.8
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.0e-32 141.4 132 57.6
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 6.5e-32 141.0 127 59.1
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 6.5e-32 141.0 127 59.1
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 6.5e-32 141.0 127 59.1
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 8.6e-32 140.6 126 60.3
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.1e-31 140.2 130 56.9
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 1.1e-31 140.2 126 60.3
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.1e-31 140.2 127 56.7
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 1.5e-31 139.8 137 55.5
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 1.9e-31 139.4 117 59.8
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 2.5e-31 139.0 127 58.3
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 2.5e-31 139.0 127 58.3
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 2.5e-31 139.0 127 60.6
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 2.5e-31 139.0 117 60.7
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 3.2e-31 138.7 125 56.8
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 5.5e-31 137.9 127 55.9
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 5.5e-31 137.9 130 56.9
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 9.5e-31 137.1 129 56.6
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 1.2e-30 136.7 131 54.2
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.6e-30 136.3 115 57.4
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 1.6e-30 136.3 132 56.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 2.8e-30 135.6 122 58.2
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 2.8e-30 135.6 128 56.2
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 3.6e-30 135.2 128 57.0
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 4.7e-30 134.8 128 55.5
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 4.7e-30 134.8 124 58.1
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 6.1e-30 134.4 122 58.2
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.0e-29 133.7 128 57.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 1.0e-29 133.7 132 54.5
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 1.0e-29 133.7 128 55.5
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 1.8e-29 132.9 122 58.2
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 2.3e-29 132.5 129 56.6
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 2.3e-29 132.5 129 56.6
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 2.3e-29 132.5 130 55.4
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 3.0e-29 132.1 127 53.5
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 3.0e-29 132.1 135 55.6
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 4.0e-29 131.7 118 57.6
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 4.0e-29 131.7 132 53.8
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 4.0e-29 131.7 132 53.0
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 4.0e-29 131.7 132 53.0
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 8.8e-29 130.6 129 55.0
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 1.2e-28 130.2 129 55.8
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 1.5e-28 129.8 122 56.6
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 2.0e-28 129.4 127 53.5
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 4.4e-28 128.3 127 52.8
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 5.7e-28 127.9 127 50.4
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.3e-27 126.7 113 60.2
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 2.2e-27 125.9 127 53.5
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 3.7e-27 125.2 133 49.6
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 6.3e-27 124.4 113 58.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.8e-26 122.9 127 52.8
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 2.4e-26 122.5 105 64.8
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 2.4e-26 122.5 122 52.5
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.4e-26 122.5 120 54.2
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 4.1e-26 121.7 116 56.0
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 4.1e-26 121.7 119 53.8
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 5.4e-26 121.3 116 51.7
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 7.0e-26 120.9 111 56.8
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.2e-25 120.2 118 54.2
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.2e-25 120.2 136 49.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 3.5e-25 118.6 118 53.4
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.5e-25 118.6 118 53.4
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.5e-25 118.2 118 54.2
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 4.5e-25 118.2 128 52.3
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.0e-24 117.1 118 55.1
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.7e-24 116.3 105 55.2
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 2.9e-24 115.5 104 56.7
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 1.6e-22 109.8 113 52.2
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 2.8e-22 109.0 123 46.3
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 8.0e-22 107.5 101 57.4
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.4e-21 106.7 105 55.2
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 1.7e-19 99.8 120 46.7
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 1.1e-18 97.1 84 57.1
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 7.0e-18 94.4 100 50.0
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 1.7e-16 89.7 132 37.1
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.1e-13 80.5 117 37.6
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.4e-12 75.1 50 72.0
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.0e-09 66.2 90 38.9
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 3.9e-08 62.0 146 32.2
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 3.9e-08 62.0 146 32.2
VMungo0540G0387 Vigna mungo HOM05D000789 ORTHO05D000897 4.3e-07 58.5 115 36.5
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 3.6e-06 55.5 91 34.1
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 4.7e-06 55.1 85 32.9
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 8.1e-06 54.3 80 41.2


User provided reference genes

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