Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.5e-97 359.4 170 100.0
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.4e-97 358.2 170 99.4
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 8.2e-83 310.5 170 84.7
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 5.9e-73 277.7 172 76.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.1e-70 269.2 170 72.9
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 4.0e-69 265.0 170 70.6
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 3.1e-66 255.4 170 65.3
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.1e-66 255.4 170 67.6
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 3.5e-65 251.9 170 66.5
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 5.9e-65 251.1 169 64.5
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 5.9e-65 251.1 169 64.5
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.9e-65 251.1 170 63.5
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.0e-64 250.4 172 65.1
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 2.2e-64 249.2 169 62.7
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 8.5e-64 247.3 171 64.3
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.9e-63 246.1 170 63.5
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 4.2e-63 245.0 170 62.9
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 5.5e-63 244.6 170 63.5
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 9.5e-63 243.8 170 64.1
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.2e-62 243.4 170 64.1
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.6e-62 243.0 170 64.1
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 1.6e-62 243.0 170 63.5
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-62 243.0 170 63.5
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.1e-62 242.7 170 63.5
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 4.7e-62 241.5 172 65.1
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.3e-61 239.2 170 61.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 5.2e-61 238.0 172 64.0
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.5e-60 236.5 170 61.8
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.5e-60 236.5 170 63.5
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.0e-60 236.1 170 60.0
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 2.0e-60 236.1 170 61.2
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.6e-60 235.7 170 62.4
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.4e-60 235.3 170 60.6
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 7.5e-60 234.2 165 62.4
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.7e-59 233.0 170 61.8
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.7e-59 233.0 170 61.8
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.7e-59 233.0 170 60.6
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.2e-59 232.6 170 60.6
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.8e-59 232.3 170 60.6
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 6.3e-59 231.1 170 59.4
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 8.3e-59 230.7 170 58.8
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.8e-58 229.6 174 60.3
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.4e-58 229.2 170 61.2
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 4.1e-58 228.4 181 57.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 5.4e-58 228.0 170 61.2
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 7.0e-58 227.6 170 61.2
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 9.2e-58 227.3 172 61.0
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 9.2e-58 227.3 170 61.8
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.6e-57 226.5 170 60.6
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.6e-57 226.5 170 58.2
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.6e-57 226.5 155 67.7
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.7e-57 225.7 170 55.9
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 4.5e-57 224.9 170 59.4
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 7.7e-57 224.2 170 56.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.3e-56 223.4 170 57.1
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.3e-56 223.4 170 59.4
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.3e-56 223.4 170 59.4
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 2.3e-56 222.6 170 56.5
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 2.3e-56 222.6 170 56.5
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 2.3e-56 222.6 170 56.5
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 2.3e-56 222.6 170 56.5
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.3e-56 222.6 170 57.6
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.9e-56 222.2 170 58.8
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.8e-56 221.9 170 55.9
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.0e-56 221.5 170 56.5
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 6.6e-56 221.1 170 54.1
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.6e-56 221.1 170 57.6
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-55 219.9 170 56.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 1.9e-55 219.5 170 57.6
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 1.9e-55 219.5 170 57.6
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-55 219.2 170 57.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.3e-55 218.8 170 55.9
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.3e-55 218.4 170 55.3
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 7.3e-55 217.6 170 55.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.6e-54 216.5 170 53.5
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.6e-54 216.5 171 60.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.1e-54 216.1 175 54.9
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 2.8e-54 215.7 170 55.9
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.8e-54 215.7 193 52.8
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 3.6e-54 215.3 170 55.9
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.0e-53 213.8 170 55.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.4e-53 213.4 170 57.6
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.4e-53 213.4 207 50.2
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 6.8e-53 211.1 170 55.9
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 6.8e-53 211.1 170 55.9
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 6.8e-53 211.1 170 55.9
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 8.9e-53 210.7 143 66.4
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-52 209.1 171 55.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 5.7e-52 208.0 170 56.5
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 7.5e-52 207.6 171 56.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 7.5e-52 207.6 171 56.7
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 2.2e-51 206.1 207 48.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 4.9e-51 204.9 170 57.1
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 8.3e-51 204.1 167 53.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.1e-50 203.8 203 48.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 2.4e-50 202.6 170 51.2
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.2e-50 202.2 186 54.3
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 4.1e-50 201.8 170 51.8
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.1e-50 201.8 170 52.9
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.2e-49 200.3 155 58.1
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 1.6e-49 199.9 169 54.4
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.6e-49 199.9 170 51.2
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.0e-49 199.5 170 51.2
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 5.9e-49 198.0 170 51.2
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.0e-48 197.2 191 50.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.9e-48 195.3 171 52.0
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.9e-48 195.3 171 52.0
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 8.6e-48 194.1 184 50.0
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.5e-47 193.4 139 59.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.5e-47 192.6 167 52.7
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 2.8e-46 189.1 192 49.5
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 2.3e-45 186.0 192 50.5
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 5.2e-45 184.9 239 42.3
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 3.4e-44 182.2 170 48.8
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 4.9e-43 178.3 173 49.1
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 5.4e-42 174.9 170 51.8
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 4.6e-41 171.8 139 58.3
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.8e-41 171.0 126 57.1
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.7e-40 169.9 147 52.4
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 8.1e-38 161.0 153 47.7
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.2e-36 157.1 175 44.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 9.8e-36 154.1 104 61.5
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.7e-35 153.3 170 45.9
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 2.9e-35 152.5 111 56.8
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.9e-35 152.5 171 42.7
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.2e-33 147.1 171 40.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.2e-33 147.1 127 56.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.7e-32 143.3 188 41.5
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.3e-32 142.9 176 41.5
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.0e-28 129.8 170 39.4
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 2.9e-27 125.9 99 59.6
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.1e-25 119.8 91 52.7
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.1e-25 119.8 109 52.3
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 7.8e-25 117.9 172 37.2
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 3.0e-24 115.9 171 34.5
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.6e-22 110.2 164 38.4
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 4.0e-21 105.5 184 32.1
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.2e-21 105.1 163 33.7
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.6e-20 101.3 139 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.7e-17 92.8 173 31.8
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 2.7e-17 92.8 88 54.5
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.3e-16 89.7 98 40.8
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.6e-12 76.3 54 53.7
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 7.6e-12 74.7 71 47.9
AUR62042733 Chenopodium quinoa HOM05D000996 ORTHO05D137818 5.6e-07 58.5 27 96.3
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 8.1e-06 54.7 143 27.3


User provided reference genes

Program Settings