Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 7.1e-142 507.3 263 100.0
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 8.4e-135 483.8 268 94.0
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 1.3e-98 363.6 275 71.3
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 1.3e-82 310.5 198 72.7
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 2.2e-79 299.7 198 71.2
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 2.2e-79 299.7 221 67.0
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 1.9e-78 296.6 192 70.8
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 8.0e-77 291.2 171 79.5
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 2.6e-75 286.2 200 68.5
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 4.4e-75 285.4 203 67.0
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 9.8e-75 284.3 223 63.2
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 1.7e-74 283.5 244 59.8
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 8.3e-74 281.2 225 63.1
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.1e-73 280.8 195 66.2
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.8e-73 280.0 195 67.2
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 3.1e-73 279.3 189 68.3
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 4.1e-73 278.9 209 62.7
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 4.1e-73 278.9 164 77.4
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 5.4e-73 278.5 195 67.7
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 5.4e-73 278.5 199 66.3
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 9.1e-73 277.7 200 66.0
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 1.2e-72 277.3 199 64.8
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 2.0e-72 276.6 218 62.8
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 2.0e-72 276.6 195 67.2
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 2.0e-72 276.6 195 67.2
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 2.7e-72 276.2 199 64.8
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 3.5e-72 275.8 207 61.8
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 5.9e-72 275.0 164 75.6
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 5.9e-72 275.0 173 74.0
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 1.0e-71 274.2 187 68.4
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.0e-71 274.2 239 56.9
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.7e-71 273.5 193 68.4
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.3e-71 273.1 160 76.2
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 2.9e-71 272.7 201 62.7
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 3.8e-71 272.3 198 63.1
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 5.0e-71 271.9 199 65.3
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 6.5e-71 271.6 201 64.7
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 6.5e-71 271.6 201 63.7
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 8.6e-71 271.2 209 61.7
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 8.6e-71 271.2 198 64.6
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 1.1e-70 270.8 198 64.6
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 1.5e-70 270.4 195 64.1
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 3.2e-70 269.2 210 61.4
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 4.2e-70 268.9 207 62.8
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 7.2e-70 268.1 201 60.7
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 7.2e-70 268.1 207 62.8
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 9.5e-70 267.7 184 69.6
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 1.2e-69 267.3 196 65.8
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 2.8e-69 266.2 201 66.7
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 2.8e-69 266.2 193 64.8
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 3.6e-69 265.8 197 61.9
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 4.7e-69 265.4 207 62.3
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 4.7e-69 265.4 193 65.3
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 6.1e-69 265.0 198 63.1
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 6.1e-69 265.0 192 67.2
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 6.1e-69 265.0 193 65.8
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.0e-68 264.2 198 62.6
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 1.4e-68 263.8 201 64.2
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.4e-68 263.8 198 63.1
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.8e-68 263.5 197 62.4
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 2.3e-68 263.1 226 56.6
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 3.0e-68 262.7 193 66.3
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 4.0e-68 262.3 190 64.7
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 5.2e-68 261.9 247 55.5
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 8.9e-68 261.2 217 59.9
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.2e-67 260.8 192 64.1
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 1.5e-67 260.4 201 63.2
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 2.0e-67 260.0 201 63.2
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.0e-67 260.0 190 65.8
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 2.6e-67 259.6 218 59.2
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 4.4e-67 258.8 201 60.7
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 4.4e-67 258.8 193 65.8
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 5.7e-67 258.5 230 57.0
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 7.5e-67 258.1 266 52.3
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.2e-66 256.5 159 72.3
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 3.7e-66 255.8 253 53.8
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 3.7e-66 255.8 170 66.5
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 3.7e-66 255.8 233 53.6
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.4e-65 253.8 193 62.2
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 1.8e-65 253.4 192 63.5
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 1.8e-65 253.4 194 63.9
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 2.4e-65 253.1 202 60.4
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 7.0e-65 251.5 195 63.1
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.6e-64 250.4 210 58.6
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 2.0e-64 250.0 199 61.8
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 2.0e-64 250.0 253 52.2
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 7.8e-64 248.1 223 54.7
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 3.8e-63 245.7 199 64.8
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.1e-62 244.2 226 56.6
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.6e-62 241.9 187 64.7
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 1.6e-61 240.4 186 60.2
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.8e-61 239.6 196 57.1
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.2e-59 234.2 197 60.9
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 3.7e-58 229.2 162 65.4
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 8.3e-58 228.0 197 54.8
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 8.6e-55 218.0 120 81.7
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.6e-53 213.8 300 41.3
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 3.1e-52 209.5 263 54.0
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 3.1e-52 209.5 240 43.3
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 5.8e-51 205.3 190 55.3
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 8.3e-50 201.4 202 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 2.1e-45 186.8 181 49.7
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 7.3e-38 161.8 175 40.0
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 8.1e-37 158.3 189 51.3
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 2.2e-34 150.2 159 43.4
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.4e-27 126.3 109 59.6
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 8.4e-26 121.7 66 75.8
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.1e-24 117.1 90 62.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 6.0e-24 115.5 260 32.3
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 2.1e-21 107.1 175 34.9
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 4.8e-21 105.9 217 30.4
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 3.8e-18 96.3 77 59.7
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-09 68.2 104 36.5
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 1.4e-09 67.8 51 58.8
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.5e-06 57.8 43 60.5
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 3.3e-06 56.6 32 68.8


User provided reference genes

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