Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024074 Chenopodium quinoa HOM05D000060 ORTHO05D000082 3.4e-100 368.2 174 100.0
AUR62035382 Chenopodium quinoa HOM05D000060 ORTHO05D000082 3.6e-94 348.2 174 95.4
EL10Ac8g18320 Beta vulgaris HOM05D000060 ORTHO05D000082 1.7e-75 286.2 174 78.2
Ah.01g002920 Amaranthus hybridus HOM05D000060 ORTHO05D000082 4.8e-54 214.9 157 67.5
Sc12g0003310 Simmondsia chinensis HOM05D000060 ORTHO05D000082 1.7e-27 126.7 182 44.0
CiPaw.03G183600 Carya illinoinensis HOM05D000060 ORTHO05D000082 7.5e-23 111.3 175 41.7
CANSAT21G1435 Cannabis sativa HOM05D000060 ORTHO05D000082 2.2e-22 109.8 191 41.4
CANSAT21G1438 Cannabis sativa HOM05D000060 ORTHO05D000082 2.2e-22 109.8 191 41.4
RcHm_v2.0_Chr2g0128781 Rosa chinensis HOM05D000060 ORTHO05D000082 1.7e-19 100.1 178 37.6
FAN02G2286 Fragaria x ananassa HOM05D000060 ORTHO05D000082 2.3e-19 99.8 183 36.6
CSS0006385 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000082 2.9e-19 99.4 186 38.2
Manes.12G091800 Manihot esculenta HOM05D000060 ORTHO05D000082 2.9e-19 99.4 190 37.4
Prupe.3G126300 Prunus persica HOM05D000060 ORTHO05D000082 2.9e-19 99.4 180 37.8
FvH4_6g26950 Fragaria vesca HOM05D000060 ORTHO05D000082 1.9e-18 96.7 183 36.1
Peaxi162Scf00384g00066 Petunia axillaris HOM05D000060 ORTHO05D000082 2.5e-18 96.3 174 35.6
Nitab4.5_0000537g0030 Nicotiana tabacum HOM05D000060 ORTHO05D000082 3.3e-18 95.9 178 36.0
CAN.G318.6 Capsicum annuum HOM05D000060 ORTHO05D000082 4.3e-18 95.5 174 40.2
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-17 94.0 174 37.4
QL08p040955 Quercus lobata HOM05D000060 ORTHO05D000082 3.6e-17 92.4 163 36.8
Solyc12g010810.1 Solanum lycopersicum HOM05D000060 ORTHO05D000082 3.6e-17 92.4 177 38.4
CiPaw.04G130200 Carya illinoinensis HOM05D000060 ORTHO05D000082 1.4e-16 90.5 185 37.3
Oeu064836.1 Olea europaea HOM05D000060 ORTHO05D000082 2.0e-15 86.7 172 35.5
Rhsim04G0072500 Rhododendron simsii HOM05D000211 ORTHO05D002682 2.6e-15 86.3 175 30.9
Ciclev10017646m.g Citrus clementina HOM05D000060 ORTHO05D000082 7.5e-15 84.7 189 33.9
Lj8C105T13 Lonicera japonica HOM05D000060 ORTHO05D000082 7.5e-15 84.7 164 38.4
Thecc.01G240500 Theobroma cacao HOM05D000060 ORTHO05D000082 7.5e-15 84.7 50 72.0
Atru.chr6.2841 Acer truncatum HOM05D000211 ORTHO05D002682 1.3e-14 84.0 185 33.5
Lsat_1_v5_gn_4_28400 Lactuca sativa HOM05D000060 ORTHO05D000082 1.7e-14 83.6 160 38.1
Gohir.A11G060100 Gossypium hirsutum HOM05D000060 ORTHO05D000082 4.9e-14 82.0 51 66.7
Gohir.D11G064200 Gossypium hirsutum HOM05D000060 ORTHO05D000082 4.9e-14 82.0 51 66.7
Gorai.007G069400 Gossypium raimondii HOM05D000060 ORTHO05D000082 4.9e-14 82.0 51 66.7
Nn1g04292 Nelumbo nucifera HOM05D000060 ORTHO05D000082 1.1e-13 80.9 174 32.2
Actinidia30448 Actinidia chinensis HOM05D000060 ORTHO05D000082 1.8e-13 80.1 49 71.4
SalBow7G1043 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.4e-13 79.7 170 36.5
SalBow7G2299 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.4e-13 79.7 170 36.5
Carub.0001s0565 Capsella rubella HOM05D000060 ORTHO05D000082 4.1e-13 79.0 171 35.7
MD07G1305100 Malus domestica HOM05D000060 ORTHO05D000082 4.1e-13 79.0 176 33.5
AT1G06280 Arabidopsis thaliana HOM05D000060 ORTHO05D000082 5.4e-13 78.6 105 46.7
CARHR005860 Cardamine hirsuta HOM05D000060 ORTHO05D000082 1.6e-12 77.0 171 37.4
Potri.019G092201 Populus trichocarpa HOM05D000060 ORTHO05D000082 2.0e-12 76.6 178 34.8
BcaB03g13423 Brassica carinata HOM05D000060 ORTHO05D000082 2.7e-12 76.3 170 38.8
Thhalv10008796m.g Eutrema salsugineum HOM05D000060 ORTHO05D000082 7.8e-12 74.7 103 43.7
DCAR_013052 Daucus carota HOM05D000060 ORTHO05D000082 1.7e-11 73.6 168 31.0
ClCG02G010110 Citrullus lanatus HOM05D000060 ORTHO05D000082 2.3e-11 73.2 166 33.1
Dinv02420 Davidia involucrata HOM05D000060 ORTHO05D000082 3.9e-11 72.4 181 33.1
Nitab4.5_0006973g0080 Nicotiana tabacum HOM05D000060 ORTHO05D000082 3.9e-11 72.4 73 52.1
Sp1g05090 Schrenkiella parvula HOM05D000060 ORTHO05D000082 3.9e-11 72.4 88 45.5
THA.LOC104800853 Tarenaya hassleriana HOM05D000060 ORTHO05D000082 6.6e-11 71.6 121 39.7
Duzib264G0988 Durio zibethinus HOM05D000060 ORTHO05D000082 1.1e-10 70.9 171 33.3
Aa31LG1G7300 Aethionema arabicum HOM05D000060 ORTHO05D000082 1.5e-10 70.5 89 47.2
Aqoxy1G02232 Aquilegia oxysepala HOM05D000060 ORTHO05D000082 1.9e-10 70.1 99 40.4
Lj3g0014591 Lotus japonicus HOM05D000060 ORTHO05D000082 2.5e-10 69.7 105 39.0
BcaC07g42076 Brassica carinata HOM05D000060 ORTHO05D000082 7.3e-10 68.2 125 38.4
MELO3C019314.2 Cucumis melo HOM05D000060 ORTHO05D000082 7.3e-10 68.2 194 32.0
A08p36040 Brassica napus HOM05D000060 ORTHO05D000082 9.5e-10 67.8 125 38.4
BraA08t35510Z Brassica rapa HOM05D000060 ORTHO05D000082 1.2e-09 67.4 125 37.6
CsaV3_2G034590 Cucumis sativus L. HOM05D000060 ORTHO05D000082 1.2e-09 67.4 45 57.8
Sed0026454 Sechium edule HOM05D000060 ORTHO05D000082 1.2e-09 67.4 169 31.4
AL1G16290 Arabidopsis lyrata HOM05D000060 ORTHO05D000082 2.1e-09 66.6 54 59.3
BcaC07g36800 Brassica carinata HOM05D000060 ORTHO05D000082 2.1e-09 66.6 54 59.3
C08p02470 Brassica napus HOM05D000060 ORTHO05D000082 2.1e-09 66.6 54 59.3
BolC8t47039H Brassica oleracea HOM05D000060 ORTHO05D000082 2.1e-09 66.6 54 59.3
Sabra19G0105500 Salix brachista HOM05D000060 ORTHO05D000082 2.8e-09 66.2 168 29.8
SGA_v2.0_scaffold109G31119 Striga asiatica HOM05D000104 ORTHO05D008076 2.8e-09 66.2 48 58.3
C08p51310 Brassica napus HOM05D001058 ORTHO05D000911 3.6e-09 65.9 54 57.4
BolC8t52657H Brassica oleracea HOM05D001058 ORTHO05D000911 3.6e-09 65.9 54 57.4
Migut.H02160 Erythranthe guttata HOM05D000060 ORTHO05D000082 8.0e-09 64.7 90 43.3
TWI14G0217 Tripterygium wilfordii HOM05D000060 ORTHO05D000082 8.0e-09 64.7 182 31.9
DCAR_009764 Daucus carota HOM05D000060 ORTHO05D000082 1.1e-08 64.3 146 30.8
VMungo1127G1659 Vigna mungo HOM05D000060 ORTHO05D000082 1.1e-08 64.3 69 47.8
Cfa014735 Carpinus fangiana HOM05D000060 ORTHO05D000082 1.4e-08 63.9 35 74.3
HanXRQChr17g0565281 Helianthus annuus HOM05D000060 ORTHO05D000082 2.3e-08 63.2 50 56.0
arahy.Tifrunner.gnm1.ann1.C3RNH2 Arachis hypogaea HOM05D000060 ORTHO05D000082 3.1e-08 62.8 34 67.6
arahy.Tifrunner.gnm1.ann1.M60K6J Arachis hypogaea HOM05D000060 ORTHO05D000082 3.1e-08 62.8 34 67.6
Phvul.011G116500 Phaseolus vulgaris HOM05D000060 ORTHO05D000082 3.1e-08 62.8 42 61.9
HanXRQChr16g0526371 Helianthus annuus HOM05D000060 ORTHO05D000082 6.8e-08 61.6 166 29.5
Glyma.12G120700 Glycine max HOM05D000060 ORTHO05D000082 8.9e-08 61.2 41 58.5
A09p67050 Brassica napus HOM05D001058 ORTHO05D000911 1.2e-07 60.8 54 55.6
BraA09t42039Z Brassica rapa HOM05D001058 ORTHO05D000911 1.2e-07 60.8 54 55.6
Glyma.06G285100 Glycine max HOM05D000060 ORTHO05D000082 2.0e-07 60.1 33 66.7
Potri.013G123900 Populus trichocarpa HOM05D000060 ORTHO05D000082 3.4e-07 59.3 173 30.1
TWI23G0645 Tripterygium wilfordii HOM05D000060 ORTHO05D000082 5.8e-07 58.5 105 35.2
Lalb_Chr03g0029761 Lupinus albus HOM05D000060 ORTHO05D000082 7.5e-07 58.2 180 29.4
DCAR_021275 Daucus carota HOM05D000060 ORTHO05D000082 1.3e-06 57.4 84 39.3
Psat7g166760 Pisum sativum HOM05D000060 ORTHO05D000082 1.3e-06 57.4 36 61.1
Lalb_Chr19g0135011 Lupinus albus HOM05D000060 ORTHO05D000082 1.7e-06 57.0 51 49.0
PSO541G3944 Papaver somniferum HOM05D000060 ORTHO05D000082 1.7e-06 57.0 60 43.3
Duzib192G0351 Durio zibethinus HOM05D000060 ORTHO05D025282 2.9e-06 56.2 152 30.3
TPR.G29324 Trifolium pratense HOM05D000060 ORTHO05D000082 2.9e-06 56.2 69 46.4


User provided reference genes

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