Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 0.0e+00 1417.9 807 100.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 0.0e+00 1267.7 816 85.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.0e-219 766.5 792 54.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.0e-196 688.0 844 49.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.4e-172 610.9 897 46.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.6e-136 490.0 781 41.9
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 4.4e-118 429.9 714 38.5
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.5e-113 414.8 696 37.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.1e-111 408.7 737 35.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 4.0e-111 406.8 664 37.7
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 5.8e-110 402.9 742 34.8
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 9.9e-110 402.1 745 36.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 5.4e-108 396.4 721 36.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 8.1e-104 382.5 743 35.0
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 4.0e-103 380.2 743 35.0
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 8.9e-103 379.0 800 36.1
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 8.9e-103 379.0 740 35.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.2e-101 374.4 712 34.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.8e-101 373.6 810 34.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.9e-100 371.3 700 35.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.2e-100 370.5 700 35.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 9.2e-100 369.0 717 34.3
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.7e-99 367.5 752 36.0
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.5e-99 367.1 738 35.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 3.5e-99 367.1 677 35.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.0e-99 366.3 722 34.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.0e-99 366.3 726 35.3
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.3e-98 365.2 801 31.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.7e-98 364.8 745 35.2
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.1e-97 362.1 861 33.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.5e-97 361.7 832 36.3
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 7.3e-97 359.4 724 35.4
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 7.3e-97 359.4 811 33.3
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.6e-96 357.1 776 38.5
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 6.2e-96 356.3 793 35.2
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.1e-95 355.5 746 34.6
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-94 351.7 708 34.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.8e-94 349.7 759 39.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-93 348.2 769 34.6
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.8e-93 347.1 748 34.6
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 6.4e-93 346.3 781 35.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.4e-93 345.9 712 34.0
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.4e-92 345.1 729 35.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.4e-92 345.1 785 33.0
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.4e-92 344.4 719 33.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.6e-91 341.7 840 31.1
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 4.6e-91 340.1 783 31.5
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.1e-89 335.5 697 33.3
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.6e-89 332.4 821 34.8
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.6e-88 331.6 715 32.2
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.2e-86 325.5 702 32.2
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.5e-86 325.1 712 34.0
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 7.6e-86 322.8 812 33.9
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 9.9e-86 322.4 699 31.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 9.9e-86 322.4 722 33.1
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.8e-85 320.5 690 33.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.9e-85 320.1 730 32.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 4.9e-85 320.1 814 31.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.4e-85 319.7 723 33.2
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-84 318.9 725 31.9
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.9e-84 318.2 736 35.1
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.2e-84 317.4 755 36.0
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 5.4e-84 316.6 758 34.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.1e-83 314.7 779 37.6
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 4.6e-83 313.5 695 32.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 7.9e-83 312.8 736 32.2
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.8e-82 311.6 710 33.1
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 3.9e-82 310.5 725 34.6
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 5.1e-82 310.1 699 32.9
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 8.7e-82 309.3 739 31.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.5e-81 308.5 794 32.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.5e-81 307.8 738 31.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.8e-80 304.3 695 34.2
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.7e-80 303.9 685 35.5
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 3.7e-80 303.9 791 37.7
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.4e-79 302.0 702 32.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.1e-79 300.8 773 32.0
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.0e-79 300.4 702 33.3
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.4e-78 297.4 714 30.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.7e-77 295.0 731 30.6
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.7e-77 295.0 909 29.0
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 3.8e-77 293.9 703 31.2
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.8e-77 293.9 774 32.9
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 8.4e-77 292.7 703 30.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.4e-76 292.0 697 32.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.5e-76 291.2 703 31.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.2e-76 290.4 704 31.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 5.5e-76 290.0 726 31.8
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.1e-75 288.1 737 30.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.1e-75 288.1 710 31.4
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.1e-74 283.5 624 32.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.7e-74 283.1 697 31.4
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 8.7e-74 282.7 703 30.6
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 8.7e-74 282.7 746 30.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.5e-73 282.0 700 33.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.5e-70 271.9 891 28.1
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-69 269.2 754 32.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.8e-69 267.3 848 29.7
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.4e-68 265.4 779 30.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.9e-67 259.6 676 32.0
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-66 259.2 771 28.5
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-66 259.2 758 29.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 4.5e-62 243.8 748 28.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.9e-62 243.4 726 28.9
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.0e-61 240.4 691 30.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.9e-60 238.4 640 32.3
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 7.2e-60 236.5 718 33.8
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 4.8e-56 223.8 918 26.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.8e-55 221.9 691 27.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 3.1e-55 221.1 588 31.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.1e-55 221.1 863 27.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.2e-51 209.1 723 28.4
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 5.1e-50 203.8 267 43.1
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.1e-47 194.5 736 24.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.7e-43 181.4 299 39.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.0e-42 177.9 278 39.2
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.4e-41 174.1 713 25.4
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-40 172.2 162 50.6
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 4.8e-40 170.6 394 34.3
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.8e-39 168.7 283 38.9
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.5e-38 164.5 703 26.0
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.0e-33 148.7 231 39.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.6e-33 148.3 256 38.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.2e-29 135.2 186 40.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.6e-27 129.0 147 46.9
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 5.2e-26 124.0 148 44.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.8e-24 118.2 336 31.2
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 4.7e-19 100.9 140 40.0
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.4e-18 99.4 740 26.9
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.0e-18 98.2 81 55.6
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 4.0e-18 97.8 254 31.1
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.7e-17 94.0 205 32.2
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 8.3e-16 90.1 374 30.7
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.6e-14 85.9 357 31.1
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 5.0e-13 80.9 186 29.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-11 76.3 165 33.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 5.2e-10 70.9 168 28.0
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-08 66.2 74 45.9


User provided reference genes

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