Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 0.0e+00 2209.5 1210 100.0
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 0.0e+00 1833.9 1182 88.4
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 0.0e+00 1201.0 1192 59.6
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.2e-274 949.1 1161 53.4
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 6.4e-246 855.1 1198 47.2
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.8e-187 661.0 1276 40.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 9.1e-176 622.1 1219 40.8
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.6e-167 594.7 1261 39.5
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.0e-166 592.0 1236 40.3
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 2.9e-158 563.9 1251 37.6
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 2.9e-158 563.9 1221 39.3
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.9e-157 561.2 1237 38.8
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 4.7e-156 556.6 1235 37.3
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 5.2e-155 553.1 1247 37.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 7.5e-154 549.3 1235 38.5
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.4e-152 545.0 1254 38.0
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.4e-152 545.0 1247 38.0
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 4.1e-152 543.5 1253 37.4
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 9.2e-152 542.3 1225 36.3
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.7e-150 538.1 1236 37.1
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 6.6e-150 536.2 1258 37.8
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.5e-149 535.0 1225 37.4
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.9e-149 534.6 1225 37.8
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 4.3e-149 533.5 1239 37.6
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 2.8e-148 530.8 1238 37.1
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 3.6e-148 530.4 1223 37.7
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.4e-146 523.5 1222 38.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 3.7e-145 520.4 1226 37.2
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.4e-144 518.5 1275 35.8
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 4.1e-144 516.9 1220 37.4
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.0e-143 514.6 1223 37.9
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-142 511.9 1223 37.3
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 3.0e-142 510.8 1229 35.4
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 5.0e-142 510.0 1226 36.9
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.1e-141 508.8 1236 35.3
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.5e-141 508.4 1227 37.5
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 4.7e-140 503.4 1185 36.9
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 9.8e-138 495.7 1225 36.6
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 4.9e-137 493.4 1248 36.3
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.2e-136 490.7 1229 35.6
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 4.6e-135 486.9 1253 35.8
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 2.5e-133 481.1 1230 36.2
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 4.3e-133 480.3 1233 35.2
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.1e-132 478.0 1234 36.5
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 5.2e-131 473.4 1233 34.3
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 1.2e-130 472.2 1226 35.8
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 1.7e-129 468.4 1231 34.4
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 6.4e-129 466.5 1232 35.7
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.9e-128 464.9 1227 35.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 7.8e-127 459.5 1230 35.3
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 2.8e-124 451.1 1228 34.9
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 6.2e-124 449.9 1130 36.2
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 8.1e-124 449.5 1217 35.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.3e-123 448.0 1236 34.9
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 5.2e-123 446.8 1241 33.7
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.5e-122 445.3 1232 35.1
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.3e-121 442.2 1232 33.4
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 9.2e-120 436.0 1250 33.8
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.7e-118 431.8 1369 32.6
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 6.6e-118 429.9 1203 34.7
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 2.5e-117 427.9 1230 33.3
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 4.4e-114 417.2 1201 33.9
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 9.9e-114 416.0 1241 33.7
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.4e-112 410.2 1242 32.5
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 8.7e-110 402.9 1174 33.7
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.1e-109 402.5 1228 34.0
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 3.3e-109 401.0 1177 33.7
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 6.9e-107 393.3 1203 33.0
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 6.9e-107 393.3 1229 33.2
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 1.2e-106 392.5 1225 33.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 4.4e-106 390.6 1227 33.3
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.1e-104 386.0 1141 33.2
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 3.9e-102 377.5 1314 30.8
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 4.0e-99 367.5 1219 31.3
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.6e-98 364.8 1113 33.9
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 2.6e-98 364.8 1237 32.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 3.4e-98 364.4 1154 33.6
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 2.1e-95 355.1 1180 30.8
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 7.9e-95 353.2 1161 33.7
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 1.3e-94 352.4 1244 32.0
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.3e-92 345.9 1163 31.4
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 1.3e-92 345.9 1163 31.4
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.3e-92 345.9 1163 31.4
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.1e-91 342.8 1224 30.4
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-91 342.4 1175 31.6
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 2.4e-91 341.7 1124 31.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 3.1e-91 341.3 1172 31.7
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 6.9e-91 340.1 1146 32.1
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 5.8e-90 337.0 1178 30.5
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.0e-89 336.3 1127 31.0
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 3.2e-88 331.3 1254 29.5
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 2.1e-87 328.6 1177 30.3
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 5.1e-86 323.9 419 49.6
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.9e-77 295.4 1090 31.4
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.7e-77 293.9 1055 32.4
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.9e-72 278.9 998 32.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 2.5e-72 278.5 1220 28.3
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 6.1e-71 273.9 490 40.4
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 4.4e-69 267.7 1321 26.2
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 5.7e-69 267.3 1210 28.8
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.1e-67 263.1 1157 28.8
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.7e-65 255.8 1216 28.4
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 4.2e-64 251.1 362 45.9
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.2e-60 238.8 1293 25.7
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.8e-60 237.7 867 30.7
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.4e-59 235.3 755 34.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.5e-57 227.3 261 52.9
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.0e-54 219.9 880 30.2
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 4.5e-50 204.5 282 47.9
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-49 202.6 995 27.6
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.9e-48 199.1 158 65.2
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 8.8e-46 190.3 1181 25.7
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 2.0e-45 189.1 1068 27.1
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 2.6e-45 188.7 1063 27.4
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 9.8e-45 186.8 144 64.6
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.7e-42 178.7 571 34.9
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 4.2e-40 171.4 746 30.4
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 2.8e-39 168.7 364 34.6
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 3.6e-39 168.3 355 33.5
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 2.8e-36 158.7 392 34.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 7.0e-35 154.1 342 40.1
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 1.7e-33 149.4 471 31.4
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.6e-31 142.9 120 63.3
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 4.0e-30 138.3 121 62.0
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.5e-24 119.8 219 39.7
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 5.8e-21 107.8 61 77.0
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 3.5e-18 98.6 134 43.3
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 3.0e-17 95.5 381 28.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.9e-17 95.1 151 42.4
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 8.6e-17 94.0 126 43.7
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.3e-16 90.9 726 24.2
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.4e-14 86.7 58 75.9
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 4.0e-14 85.1 1030 22.7
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.8e-14 84.3 150 39.3
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 1.2e-13 83.6 60 63.3
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.3e-09 70.1 58 63.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 3.0e-09 68.9 53 64.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.1e-08 67.0 56 62.5
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 4.3e-08 65.1 142 33.1
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 1.6e-07 63.2 53 62.3
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.1e-07 60.8 281 26.7
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 1.4e-06 60.1 248 27.4
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 5.2e-06 58.2 134 30.6


User provided reference genes

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