Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.0e-146 521.9 281 100.0
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 5.2e-143 511.1 281 97.5
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.3e-125 453.4 281 86.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.1e-123 446.0 281 85.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.8e-104 382.5 281 74.7
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.7e-99 365.9 281 69.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.7e-99 365.9 281 69.4
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 7.9e-99 364.4 281 71.2
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.0e-98 364.0 281 69.8
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.4e-98 363.6 281 69.8
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.0e-98 362.5 281 68.0
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 8.8e-98 360.9 281 69.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 9.7e-97 357.5 281 68.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 9.7e-97 357.5 281 68.3
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 9.7e-97 357.5 281 68.7
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.8e-96 355.9 281 68.3
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 3.7e-96 355.5 281 68.7
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.1e-95 354.0 281 68.7
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 3.1e-95 352.4 281 67.6
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.1e-95 352.4 281 67.6
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.1e-95 352.4 281 67.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.9e-95 351.3 281 68.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.2e-94 350.5 281 67.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.5e-94 350.1 281 66.9
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.5e-94 350.1 281 67.6
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.0e-94 349.7 281 66.9
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 2.6e-94 349.4 281 66.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.5e-94 348.6 281 66.9
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 7.7e-94 347.8 281 66.5
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.7e-94 347.8 281 66.5
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 2.2e-93 346.3 281 66.9
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.2e-93 346.3 281 67.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 2.9e-93 345.9 281 66.2
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.8e-93 345.5 278 66.5
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 8.5e-93 344.4 280 64.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 8.5e-93 344.4 280 64.6
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 8.5e-93 344.4 281 66.5
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.4e-92 343.6 281 65.8
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.4e-92 343.6 281 66.5
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.9e-92 343.2 281 64.8
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.5e-92 342.8 281 65.8
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.2e-92 342.4 281 66.5
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.5e-92 341.7 281 66.9
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.5e-92 341.7 281 66.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 5.5e-92 341.7 281 66.5
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 5.5e-92 341.7 281 66.5
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 9.4e-92 340.9 280 66.8
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 9.4e-92 340.9 281 64.4
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 9.4e-92 340.9 281 64.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.4e-92 340.9 281 65.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 9.4e-92 340.9 281 65.5
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.2e-91 340.5 281 64.4
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.6e-91 340.1 200 95.0
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.6e-91 340.1 281 65.8
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.1e-91 339.7 281 64.4
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 2.1e-91 339.7 281 66.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.7e-91 339.3 281 65.1
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.6e-91 339.0 281 64.4
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 4.7e-91 338.6 281 64.4
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 6.1e-91 338.2 281 66.5
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 6.1e-91 338.2 281 65.1
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 7.9e-91 337.8 281 64.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.3e-90 336.3 281 64.1
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.3e-90 336.3 281 65.5
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.3e-90 336.3 281 65.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.3e-90 336.3 278 65.5
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.3e-90 336.3 281 65.5
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.0e-90 335.9 281 66.2
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 3.9e-90 335.5 281 66.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.9e-90 335.5 278 65.1
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 5.2e-90 335.1 281 65.1
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.7e-90 334.7 281 65.5
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 8.8e-90 334.3 281 65.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.5e-89 333.6 280 63.6
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 7.4e-89 331.3 280 63.6
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.7e-88 330.1 281 62.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 6.3e-88 328.2 281 66.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.3e-88 328.2 278 64.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 8.2e-88 327.8 281 64.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.1e-87 327.4 282 63.8
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.1e-87 327.4 282 63.5
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.4e-87 327.0 282 63.8
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.4e-87 327.0 281 64.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.8e-87 326.6 281 64.4
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.4e-87 326.2 282 63.1
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 2.6e-86 322.8 282 61.7
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.0e-85 320.9 282 61.0
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.0e-85 320.9 282 62.1
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.7e-85 320.1 281 62.3
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.2e-85 319.7 282 62.4
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.9e-85 319.3 281 61.9
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.8e-85 318.9 282 61.0
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 3.8e-85 318.9 282 61.0
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.0e-85 318.5 281 60.9
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 5.5e-84 315.1 275 62.9
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 9.4e-84 314.3 282 62.8
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.7e-83 312.0 282 59.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-81 307.4 273 61.9
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.4e-81 305.4 283 60.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.4e-81 305.4 290 57.9
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 5.7e-81 305.1 282 59.9
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.7e-80 302.4 282 58.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 6.3e-80 301.6 282 59.2
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 7.0e-79 298.1 281 58.4
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.5e-78 295.4 281 57.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.3e-74 283.1 281 56.9
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.0e-66 255.8 262 57.6
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.6e-62 243.8 294 48.6
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.5e-60 236.5 195 64.6
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 4.3e-60 235.7 282 52.1
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 6.1e-59 231.9 206 62.6
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-55 221.1 182 67.6
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.1e-55 221.1 283 48.1
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.4e-50 204.1 159 65.4
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.0e-49 200.3 272 47.1
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 7.0e-47 191.8 299 44.5
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.6e-46 189.1 154 65.6
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 9.5e-44 181.4 182 54.9
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.1e-39 166.0 139 63.3
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.8e-34 150.6 280 39.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 4.4e-33 146.0 119 64.7
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 6.0e-30 135.6 115 67.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 7.8e-30 135.2 186 45.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 5.1e-29 132.5 158 49.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.6e-29 132.1 179 41.9
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 4.4e-25 119.4 221 42.1
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.8e-25 119.0 96 65.6
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 7.6e-25 118.6 182 44.0
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.3e-20 102.1 76 71.1
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.6e-19 99.8 88 64.8
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 9.9e-17 91.7 268 28.7
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 3.0e-13 80.1 58 63.8
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.9e-12 77.4 181 33.1
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.3e-12 76.6 86 51.2
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 4.8e-11 72.8 84 56.0
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 9.0e-10 68.6 290 27.2
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.5e-06 56.6 31 83.9


User provided reference genes

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