Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023790 Chenopodium quinoa HOM05D003319 ORTHO05D003739 1.5e-273 945.7 501 100.0
AUR62002401 Chenopodium quinoa HOM05D003319 ORTHO05D003739 3.0e-250 868.2 515 91.3
EL10Ac3g06093 Beta vulgaris HOM05D003319 ORTHO05D003739 1.3e-147 527.3 532 61.3
AUR62019092 Chenopodium quinoa HOM05D003319 ORTHO05D003739 4.7e-110 402.5 546 50.5
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 5.4e-106 389.0 551 49.0
Ah.07g202760 Amaranthus hybridus HOM05D003319 ORTHO05D003739 3.4e-92 343.2 480 50.8
AUR62014349 Chenopodium quinoa HOM05D003319 ORTHO05D003739 7.1e-74 282.3 542 42.6
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 3.0e-64 250.4 579 38.3
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 2.4e-61 240.7 571 36.8
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 7.9e-49 199.1 485 36.1
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 3.3e-47 193.7 528 35.0
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 2.8e-46 190.7 562 33.1
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 2.8e-46 190.7 519 36.2
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 8.1e-46 189.1 564 31.7
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 8.1e-46 189.1 525 34.9
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 1.4e-45 188.3 489 35.4
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 4.0e-45 186.8 560 33.2
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 9.0e-45 185.7 500 35.6
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 9.0e-45 185.7 505 34.9
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.2e-44 185.3 429 37.3
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 1.2e-44 185.3 571 34.3
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 2.6e-44 184.1 446 37.2
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 4.5e-44 183.3 554 32.7
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 1.0e-43 182.2 555 31.5
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 1.7e-43 181.4 473 35.9
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 2.2e-43 181.0 501 35.1
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 4.9e-43 179.9 554 34.5
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 4.9e-43 179.9 511 32.1
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 6.5e-43 179.5 581 31.0
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 8.4e-43 179.1 449 35.4
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 1.4e-42 178.3 606 31.0
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 1.9e-42 177.9 605 29.9
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 2.1e-41 174.5 540 31.7
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 4.6e-41 173.3 553 31.6
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 7.9e-41 172.6 501 33.5
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 1.0e-40 172.2 317 41.0
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 1.8e-40 171.4 438 33.8
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 1.8e-40 171.4 445 36.6
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 2.3e-40 171.0 537 33.9
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 1.5e-39 168.3 285 42.8
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 1.5e-39 168.3 534 32.4
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 3.3e-39 167.2 496 33.5
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 4.3e-39 166.8 542 31.5
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 5.7e-39 166.4 384 37.0
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 5.7e-39 166.4 511 34.4
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 5.7e-39 166.4 504 31.7
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 9.6e-39 165.6 390 36.4
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 1.3e-38 165.2 445 36.0
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 1.3e-38 165.2 489 32.9
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.6e-38 164.9 550 32.9
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.6e-38 164.9 563 31.6
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 1.6e-38 164.9 432 35.9
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 6.2e-38 162.9 410 34.6
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 8.2e-38 162.5 530 31.9
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 1.8e-37 161.4 525 32.6
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 1.8e-37 161.4 466 35.0
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 5.3e-37 159.8 489 33.1
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 5.3e-37 159.8 545 30.1
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.0e-36 157.9 570 30.7
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 2.6e-36 157.5 410 35.6
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 4.5e-36 156.8 538 31.2
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 1.7e-35 154.8 396 34.8
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 1.7e-35 154.8 545 31.0
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 2.2e-35 154.5 445 33.0
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 2.9e-35 154.1 544 29.2
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 5.0e-35 153.3 529 31.9
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 6.5e-35 152.9 227 44.5
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 6.5e-35 152.9 557 32.1
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 6.5e-35 152.9 385 36.1
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.5e-34 151.0 416 33.2
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 4.2e-34 150.2 264 38.6
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 4.2e-34 150.2 542 30.8
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 9.3e-34 149.1 458 33.4
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 1.2e-33 148.7 529 31.0
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 2.7e-33 147.5 510 31.4
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 6.1e-33 146.4 485 29.9
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 1.0e-32 145.6 516 31.8
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 1.3e-32 145.2 455 32.3
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 5.1e-32 143.3 509 31.0
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 6.7e-32 142.9 466 32.2
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 1.5e-31 141.7 239 41.0
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 1.9e-31 141.4 542 29.5
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 2.5e-31 141.0 391 36.1
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 3.3e-31 140.6 412 31.6
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 4.3e-31 140.2 403 34.7
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 7.4e-31 139.4 542 30.6
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 1.3e-30 138.7 247 39.7
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 1.6e-30 138.3 416 32.9
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 3.7e-30 137.1 407 32.4
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 4.8e-30 136.7 306 35.3
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 6.3e-30 136.3 542 30.8
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 1.8e-29 134.8 405 33.8
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.1e-29 134.0 507 31.6
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.1e-29 134.0 248 40.7
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 4.1e-29 133.7 373 33.8
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 4.1e-29 133.7 542 30.8
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 9.0e-29 132.5 380 32.9
Hund17284 Selenicereus undatus HOM05D003319 ORTHO05D003739 1.2e-28 132.1 439 34.4
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 4.5e-28 130.2 507 30.0
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 7.7e-28 129.4 508 31.3
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 1.3e-27 128.6 366 37.2
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 1.3e-27 128.6 572 28.8
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 1.7e-27 128.3 249 39.8
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 2.2e-27 127.9 547 28.7
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 2.2e-27 127.9 379 34.0
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 3.8e-27 127.1 214 42.5
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 5.0e-27 126.7 595 28.4
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 6.5e-27 126.3 405 33.3
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 8.5e-27 125.9 232 38.8
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 8.5e-27 125.9 516 29.3
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 1.4e-26 125.2 169 46.7
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 1.4e-26 125.2 530 28.1
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 4.2e-26 123.6 360 34.2
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 4.2e-26 123.6 544 31.4
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 9.4e-26 122.5 284 36.3
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 9.4e-26 122.5 291 38.1
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 2.7e-25 120.9 353 33.7
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 6.1e-25 119.8 391 31.2
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 6.1e-25 119.8 352 33.5
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 7.9e-25 119.4 386 32.9
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.8e-24 118.2 478 31.0
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 3.9e-24 117.1 389 32.1
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 8.8e-24 115.9 412 30.8
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 8.8e-24 115.9 437 30.9
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 8.8e-24 115.9 519 29.5
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 2.5e-23 114.4 389 31.6
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 2.5e-23 114.4 410 34.1
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 2.5e-23 114.4 261 35.2
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 7.4e-23 112.8 248 37.1
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 7.4e-23 112.8 542 30.1
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 9.7e-23 112.5 427 31.4
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 9.7e-23 112.5 517 29.2
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 2.2e-22 111.3 426 31.2
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 3.7e-22 110.5 526 29.3
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 3.7e-22 110.5 397 31.7
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 4.8e-22 110.2 383 31.9
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 6.3e-22 109.8 247 34.4
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 8.2e-22 109.4 501 27.1
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 8.2e-22 109.4 445 31.7
Os02g0551400 Oryza sativa ssp. japonica HOM05D003319 ORTHO05D003739 8.2e-22 109.4 216 36.1
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 3.1e-21 107.5 545 28.3
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 4.1e-21 107.1 543 28.0
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 5.3e-21 106.7 273 34.8
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 6.9e-21 106.3 536 28.2
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 6.9e-21 106.3 401 29.4
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 6.9e-21 106.3 269 37.2
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 9.1e-21 105.9 371 31.3
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 9.1e-21 105.9 371 31.3
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 9.1e-21 105.9 371 31.3
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 9.1e-21 105.9 295 33.2
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 1.2e-20 105.5 345 32.5
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 1.2e-20 105.5 371 31.3
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 1.2e-20 105.5 371 31.3
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 4.5e-20 103.6 431 29.9
Prupe.1G532600 Prunus persica HOM05D003319 ORTHO05D003739 4.5e-20 103.6 410 31.7
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 5.9e-20 103.2 536 28.0
SHI20381 Sapria himalayana HOM05D003319 ORTHO05D003739 5.9e-20 103.2 134 45.5
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 7.7e-20 102.8 210 37.1
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 1.3e-19 102.1 491 31.2
PSO478G0631 Papaver somniferum HOM05D003319 ORTHO05D003739 1.7e-19 101.7 127 48.0
LjContig00408g0021434 Lotus japonicus HOM05D003319 ORTHO05D003739 2.2e-19 101.3 154 40.3
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 2.2e-19 101.3 349 30.9
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 2.9e-19 100.9 501 28.9
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 8.5e-19 99.4 258 34.9
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 1.4e-18 98.6 420 28.1
PSO782G3353 Papaver somniferum HOM05D003319 ORTHO05D003739 7.2e-18 96.3 363 33.3
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 9.4e-18 95.9 199 35.2
Actinidia19627 Actinidia chinensis HOM05D003319 ORTHO05D003739 6.1e-17 93.2 393 30.5
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 1.0e-16 92.4 405 29.9
Zm00001eb181960 Zea mays HOM05D003319 ORTHO05D003739 1.0e-16 92.4 466 27.3
FAN12G3643 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.5e-15 88.6 77 59.7
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 2.6e-15 87.8 441 27.4
FAN12G3747 Fragaria x ananassa HOM05D003319 ORTHO05D003739 5.7e-15 86.7 77 58.4
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 2.2e-14 84.7 527 26.2
arahy.Tifrunner.gnm1.ann1.TQJ3R9 Arachis hypogaea HOM05D003319 ORTHO05D003739 2.4e-13 81.3 82 50.0
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 5.3e-13 80.1 462 27.5
arahy.Tifrunner.gnm1.ann1.UL2XNL Arachis hypogaea HOM05D003319 ORTHO05D003739 7.7e-12 76.3 67 53.7
CBR_g9137 Chara braunii HOM05D000023 ORTHO05D000002 1.7e-11 75.1 147 39.5
FvH4_4g17970 Fragaria vesca HOM05D003319 ORTHO05D003739 4.2e-10 70.5 118 40.7
Psat6g236040 Pisum sativum HOM05D003319 ORTHO05D003739 5.5e-10 70.1 90 41.1
AL2G18190 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 2.6e-07 61.2 385 27.0
Sc15g0002710 Simmondsia chinensis HOM05D003319 ORTHO05D003739 5.7e-07 60.1 61 47.5
Sed0014936 Sechium edule HOM05D003319 ORTHO05D003739 9.7e-07 59.3 322 27.3


User provided reference genes

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