Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.1e-214 749.6 363 100.0
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.9e-125 452.6 287 78.4
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 9.2e-108 394.4 338 60.9
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 6.9e-79 298.5 276 58.3
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 9.0e-79 298.1 223 61.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 9.0e-79 298.1 222 61.7
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 9.0e-79 298.1 223 63.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 3.4e-78 296.2 284 53.5
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 5.8e-78 295.4 216 64.8
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 5.8e-78 295.4 229 61.6
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.9e-77 293.1 222 62.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 2.9e-77 293.1 219 62.6
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 6.5e-77 292.0 238 59.2
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.1e-76 291.2 248 57.3
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.9e-76 290.4 188 69.7
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 2.5e-76 290.0 219 61.6
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 3.2e-76 289.7 219 62.1
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 3.2e-76 289.7 219 61.6
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 3.2e-76 289.7 219 61.2
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 7.1e-76 288.5 216 62.0
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 9.3e-76 288.1 250 55.2
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 9.3e-76 288.1 220 63.2
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.2e-75 287.7 226 60.6
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.2e-75 287.7 219 62.1
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.2e-75 287.7 199 67.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.2e-75 287.7 228 58.3
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.6e-75 287.3 231 58.0
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 1.6e-75 287.3 220 60.5
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 2.1e-75 287.0 188 67.6
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.1e-75 287.0 189 65.6
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 2.7e-75 286.6 228 61.4
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 6.0e-75 285.4 223 60.5
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 6.0e-75 285.4 223 58.7
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.0e-74 283.1 263 53.6
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 3.9e-74 282.7 270 52.6
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.9e-74 282.7 189 66.7
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.5e-73 280.8 220 57.7
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 4.3e-73 279.3 240 57.1
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 5.7e-73 278.9 188 67.6
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 7.4e-73 278.5 196 65.3
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 9.7e-73 278.1 188 66.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 9.7e-73 278.1 230 55.2
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.3e-72 277.7 251 54.6
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 1.6e-72 277.3 210 59.5
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 2.8e-72 276.6 225 60.4
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 2.8e-72 276.6 261 55.2
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 3.7e-72 276.2 223 56.5
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.7e-72 276.2 187 65.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 8.2e-72 275.0 210 58.6
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.4e-71 274.2 188 66.0
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.8e-71 273.9 208 63.0
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 2.4e-71 273.5 244 54.1
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.1e-71 273.1 244 54.5
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.1e-71 272.7 190 65.3
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.9e-71 271.9 193 65.3
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 6.9e-71 271.9 193 65.8
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.2e-70 271.2 193 65.3
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.4e-70 269.6 203 61.6
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 3.4e-70 269.6 194 63.4
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 5.9e-70 268.9 189 65.1
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.0e-69 268.1 187 63.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.7e-69 267.3 189 65.6
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.9e-69 266.5 258 51.9
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.9e-69 266.5 264 51.1
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-69 266.5 223 56.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-69 266.5 187 64.2
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 5.0e-69 265.8 188 64.4
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 5.0e-69 265.8 188 64.4
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 5.0e-69 265.8 189 61.4
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.5e-69 265.4 193 63.2
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 6.5e-69 265.4 189 65.6
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.1e-68 264.6 179 67.6
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-68 264.2 188 63.8
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.4e-68 264.2 188 63.8
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.9e-68 263.8 214 58.9
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 7.2e-68 261.9 188 63.8
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 7.2e-68 261.9 188 63.3
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 9.4e-68 261.5 188 63.3
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.6e-67 260.8 189 61.9
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.1e-67 260.4 188 63.8
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.7e-67 260.0 188 62.2
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-67 259.6 201 60.2
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 4.6e-67 259.2 188 62.8
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.0e-66 258.1 188 61.7
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-66 258.1 188 61.7
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-66 257.7 188 62.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-66 257.3 185 63.8
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.3e-66 256.9 188 62.2
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.3e-66 256.9 188 61.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 2.3e-66 256.9 201 59.2
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.3e-66 256.9 188 62.8
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 3.0e-66 256.5 188 63.3
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 3.9e-66 256.1 234 54.3
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 5.1e-66 255.8 188 61.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 5.1e-66 255.8 188 61.2
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 6.7e-66 255.4 182 63.7
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-65 254.6 188 61.7
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-65 254.2 188 60.6
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.5e-65 254.2 188 61.7
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.5e-65 253.4 188 59.6
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.3e-65 252.7 188 61.2
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.7e-65 252.3 188 61.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 7.4e-65 251.9 188 60.6
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.4e-65 251.9 193 58.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-64 251.1 188 60.6
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 8.2e-64 248.4 188 58.5
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.1e-63 246.5 165 69.7
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-62 244.6 188 58.0
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.2e-61 240.4 229 52.4
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 3.8e-61 239.6 246 50.4
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 5.0e-61 239.2 197 56.9
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.0e-61 239.2 188 56.9
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 8.5e-61 238.4 220 54.1
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 5.5e-60 235.7 189 58.7
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.1e-59 233.8 194 56.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 3.6e-59 233.0 191 57.1
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-59 233.0 191 57.1
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-58 230.7 164 62.2
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.8e-58 228.4 221 50.2
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-57 228.0 191 56.5
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.1e-57 228.0 191 56.5
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-57 226.9 197 56.3
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 6.3e-56 222.2 184 56.5
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.3e-56 222.2 199 53.8
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 7.0e-55 218.8 189 52.9
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-54 217.2 177 58.2
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.0e-54 217.2 138 70.3
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 2.6e-54 216.9 234 49.1
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-54 216.1 173 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.0e-53 214.9 232 46.6
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.9e-53 213.4 169 56.8
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 8.5e-53 211.8 187 54.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.9e-52 210.7 154 64.3
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 7.2e-52 208.8 140 70.0
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-51 206.8 196 52.6
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 7.4e-49 198.7 190 49.5
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-43 181.0 130 61.5
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 8.8e-42 175.3 210 43.8
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.2e-38 164.9 118 62.7
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-36 157.9 182 45.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.2e-36 156.8 121 62.0
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 9.4e-36 155.2 182 45.1
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 9.4e-36 155.2 182 45.1
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-35 153.3 188 44.1
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.1e-31 141.7 222 36.9
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 2.7e-30 137.1 184 40.8
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.0e-29 135.2 96 64.6
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.7e-29 134.4 187 39.6
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.5e-28 131.3 85 68.2
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.2e-25 121.7 123 49.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 3.7e-24 116.7 224 34.4
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 7.0e-23 112.5 75 66.7
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 3.9e-21 106.7 204 36.3
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.9e-21 106.7 127 44.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 8.6e-21 105.5 79 58.2
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-20 105.1 74 64.9
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 2.5e-20 104.0 79 58.2
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.6e-20 102.8 85 51.8
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.6e-17 94.0 67 65.7
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.2e-15 87.0 59 66.1
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.6e-13 79.3 63 52.4
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 5.6e-12 76.3 138 34.8
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 7.3e-12 75.9 156 32.1
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 9.5e-12 75.5 139 33.8
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 9.5e-12 75.5 139 33.8
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 4.4e-09 66.6 42 64.3


User provided reference genes

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