Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.2e-217 757.7 371 100.0
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.1e-164 583.6 319 91.2
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.3e-153 545.4 299 88.0
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.5e-148 529.3 299 85.3
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 6.5e-133 478.0 299 77.6
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.0e-130 470.7 299 76.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.8e-130 469.9 299 75.6
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.7e-130 468.0 299 76.6
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.7e-130 468.0 299 76.6
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.1e-129 467.2 299 77.6
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.1e-129 467.2 299 77.6
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-129 466.8 299 77.6
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.6e-129 466.1 299 76.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 9.7e-129 464.2 299 75.9
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.3e-128 463.8 299 76.6
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.2e-128 463.0 303 74.9
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.2e-128 463.0 299 75.6
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.2e-128 463.0 301 77.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.2e-128 463.0 299 75.3
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 3.7e-128 462.2 299 75.9
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 3.7e-128 462.2 299 76.9
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.8e-128 461.8 299 75.9
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 4.8e-128 461.8 299 75.9
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 6.3e-128 461.5 299 76.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.3e-128 461.5 299 76.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 8.2e-128 461.1 299 76.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.1e-127 460.7 299 75.9
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.1e-127 460.7 299 75.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.8e-127 459.9 299 76.3
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.8e-127 459.9 299 76.3
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.4e-127 459.5 299 76.3
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.1e-127 459.1 299 75.3
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.3e-127 458.4 299 75.3
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.0e-126 456.4 299 74.6
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 4.5e-126 455.3 300 74.7
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.9e-126 454.9 303 74.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.0e-125 454.1 299 75.9
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.0e-125 454.1 299 73.9
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.3e-125 453.8 300 75.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.7e-125 453.4 299 74.2
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.7e-125 453.4 302 73.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.2e-125 453.0 299 75.6
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-125 452.6 299 75.9
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.9e-125 452.6 299 75.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.0e-125 451.8 300 75.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.5e-125 451.4 299 75.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.5e-125 451.4 299 75.6
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 6.5e-125 451.4 300 75.0
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 6.5e-125 451.4 318 72.0
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 8.5e-125 451.1 299 73.6
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.1e-124 450.7 300 75.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 3.2e-124 449.1 300 73.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 3.2e-124 449.1 299 74.2
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.4e-124 447.6 300 73.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 9.4e-124 447.6 299 73.2
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.2e-123 447.2 300 73.3
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.2e-123 447.2 299 74.2
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.6e-123 446.8 300 73.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.1e-123 446.4 303 75.2
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.1e-123 446.4 299 75.3
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-123 446.0 299 73.2
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 3.6e-123 445.7 299 73.2
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.7e-123 445.3 299 74.2
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.4e-122 443.7 299 73.6
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-122 443.4 299 73.2
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-122 443.4 299 72.6
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 8.8e-122 441.0 300 74.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-121 440.7 300 74.0
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.0e-121 439.9 301 73.4
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 9.7e-121 437.6 299 73.9
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 9.7e-121 437.6 299 73.2
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.2e-120 436.4 299 72.9
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.2e-120 436.4 301 72.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 6.3e-120 434.9 304 71.1
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.2e-120 434.5 292 74.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.4e-119 433.7 299 72.2
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.4e-119 433.0 306 71.9
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 3.1e-119 432.6 299 73.6
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 4.1e-119 432.2 300 73.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 5.3e-119 431.8 299 72.9
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 5.3e-119 431.8 301 72.1
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 7.0e-119 431.4 247 82.6
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.0e-119 431.4 299 71.2
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 9.1e-119 431.0 302 73.2
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 9.1e-119 431.0 299 72.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.2e-118 430.6 299 71.6
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.7e-118 429.5 312 70.2
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.7e-118 429.5 299 70.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.5e-118 429.1 309 69.9
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 4.5e-118 428.7 306 69.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 4.5e-118 428.7 269 77.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.7e-117 426.8 306 69.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.2e-117 426.4 306 69.3
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.9e-117 426.0 307 69.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.5e-116 422.9 308 68.2
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.5e-116 422.9 308 68.5
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 9.4e-116 421.0 308 67.9
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.6e-115 419.1 251 80.5
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 6.1e-115 418.3 308 68.5
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 8.0e-115 417.9 307 67.4
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-114 416.8 269 75.1
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.6e-113 412.9 315 65.7
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 5.7e-113 411.8 313 66.5
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 9.1e-111 404.4 299 69.6
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.7e-109 400.2 322 64.9
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 1.7e-109 400.2 313 64.9
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 7.2e-108 394.8 315 64.4
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-105 386.7 250 73.6
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.2e-102 377.5 217 83.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 4.5e-102 375.6 299 62.9
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-101 374.0 299 65.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 7.3e-100 368.2 300 64.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 9.5e-100 367.9 226 77.9
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.7e-96 355.9 231 74.0
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.4e-95 353.2 325 57.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.2e-94 350.9 301 61.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.0e-94 350.1 295 62.7
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 3.9e-93 345.9 309 59.9
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.5e-92 343.2 299 59.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.5e-92 343.2 303 58.7
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.9e-88 329.7 299 59.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.6e-85 318.2 253 61.7
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.3e-84 316.2 204 77.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 5.2e-82 308.9 226 69.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 4.7e-75 285.8 233 62.2
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 8.1e-75 285.0 319 51.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 3.1e-74 283.1 165 83.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.1e-70 270.4 150 88.0
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.7e-69 267.3 253 55.3
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 6.6e-69 265.4 198 68.2
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 8.6e-69 265.0 157 80.3
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 7.6e-65 251.9 173 75.1
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.4e-64 248.8 153 79.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.9e-63 247.3 231 54.1
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.4e-55 219.2 127 83.5
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.1e-54 217.2 161 65.2
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.3e-51 208.0 249 45.4
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.9e-49 198.4 112 85.7
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 7.1e-47 192.2 131 75.6
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.9e-46 188.7 120 76.7
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-44 184.5 117 76.1
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-44 184.1 117 76.1
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-44 184.1 117 76.1
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-44 183.3 116 76.7
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-44 182.6 117 76.1
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.4e-44 182.2 117 75.2
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-43 181.4 117 76.1
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.8e-43 180.3 242 44.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.8e-43 179.5 117 74.4
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-42 177.6 114 75.4
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-39 167.2 93 86.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.1e-37 159.5 292 39.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 9.6e-36 155.2 101 74.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.6e-35 154.5 101 74.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-33 147.1 142 53.5
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.4e-28 129.0 84 73.8
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 8.2e-27 125.6 93 65.6
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.0e-24 116.3 140 47.9
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 4.2e-23 113.2 95 57.9
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 4.2e-23 113.2 95 57.9
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-21 107.8 64 81.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-21 106.7 64 81.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 8.8e-21 105.5 74 74.3
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-18 97.1 93 57.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.1e-18 96.7 93 58.1
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-17 94.4 93 57.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.0e-16 92.0 230 29.6
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.9e-15 87.8 79 57.0
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.5e-15 86.3 50 76.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 5.5e-15 86.3 50 76.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-14 84.7 50 74.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.6e-14 84.7 50 74.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.6e-14 83.6 47 74.5
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 6.1e-14 82.8 62 62.9
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.3e-11 75.1 110 44.5
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 2.4e-10 70.9 102 46.1
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.7e-09 65.9 68 47.1
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 1.7e-08 64.7 153 30.1


User provided reference genes

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