Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.0e-159 566.6 274 100.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.9e-135 485.0 238 97.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.4e-129 466.5 276 81.2
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.6e-115 419.1 251 76.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 8.5e-114 414.1 252 77.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.8e-109 398.3 251 72.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 8.2e-109 397.5 244 75.4
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 8.2e-109 397.5 251 72.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 8.2e-109 397.5 251 72.9
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.1e-108 397.1 251 73.7
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.1e-108 397.1 250 72.4
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.4e-108 396.7 251 74.1
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.8e-108 396.4 250 73.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.1e-108 395.6 251 73.7
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.1e-108 395.2 251 72.1
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.1e-108 395.2 251 72.9
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-108 395.2 251 71.7
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-108 395.2 251 71.3
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 4.1e-108 395.2 243 74.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 5.3e-108 394.8 243 74.9
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.0e-108 394.4 251 71.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.1e-108 394.0 252 73.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.6e-107 393.3 252 73.0
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.0e-107 392.9 251 71.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-107 392.9 251 71.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 5.9e-107 391.3 252 72.6
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.7e-107 391.0 243 73.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.0e-106 390.6 250 72.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.7e-106 389.8 245 72.7
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.2e-106 389.4 252 70.2
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.2e-106 389.4 252 71.0
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.2e-106 389.4 251 70.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.9e-106 389.0 259 69.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.9e-106 389.0 250 72.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.9e-106 389.0 251 70.5
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.8e-106 388.7 251 73.3
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.8e-106 388.7 250 72.0
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 8.5e-106 387.5 250 71.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.1e-105 387.1 250 71.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.1e-105 387.1 251 70.1
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.9e-105 386.3 243 73.3
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 4.2e-105 385.2 243 72.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.5e-105 384.8 251 70.9
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 7.2e-105 384.4 251 71.3
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 7.2e-105 384.4 260 69.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.6e-104 382.1 252 69.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.7e-104 381.7 255 70.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 6.1e-104 381.3 251 70.5
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 6.1e-104 381.3 251 69.7
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 6.1e-104 381.3 251 69.7
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.0e-103 380.6 251 69.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.8e-103 379.8 250 70.4
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.3e-103 379.4 243 72.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.0e-103 379.0 251 69.7
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 5.2e-103 378.3 250 70.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.2e-103 378.3 252 71.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 8.8e-103 377.5 288 63.5
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.0e-102 376.3 250 69.2
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.0e-102 376.3 244 70.9
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.6e-102 375.9 247 69.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.6e-102 375.9 296 61.8
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.4e-102 375.6 283 64.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.4e-102 375.6 251 71.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.4e-102 375.2 259 70.3
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.4e-102 375.2 252 70.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 7.5e-102 374.4 251 69.7
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-101 373.6 250 68.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 3.7e-101 372.1 250 68.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.7e-101 372.1 237 72.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.4e-100 369.4 251 68.9
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.1e-100 369.0 253 68.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.1e-100 369.0 253 68.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.1e-100 369.0 250 68.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.1e-100 369.0 250 69.2
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.1e-100 369.0 250 69.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 4.1e-100 368.6 253 68.0
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.1e-100 368.6 250 69.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.4e-100 368.2 250 68.8
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 7.0e-100 367.9 243 71.6
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 9.1e-100 367.5 250 68.8
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.0e-99 366.3 250 68.8
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.9e-98 362.5 254 67.3
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 5.0e-98 361.7 254 66.9
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 6.5e-98 361.3 254 66.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 4.2e-97 358.6 297 59.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.6e-96 355.5 252 67.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 8.0e-96 354.4 255 65.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-95 350.9 275 61.5
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-95 350.9 275 61.5
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.5e-94 350.1 255 65.9
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 4.9e-93 345.1 254 65.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.3e-93 344.4 261 64.0
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.4e-92 342.8 244 68.0
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 5.4e-92 341.7 251 65.7
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 7.0e-92 341.3 212 73.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-91 339.7 251 64.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 5.6e-89 331.6 256 62.1
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.1e-88 329.7 256 60.5
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 6.4e-85 318.2 194 72.7
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.1e-84 317.4 224 67.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 4.1e-84 315.5 244 60.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.5e-83 312.4 251 62.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 8.6e-82 307.8 259 60.2
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.5e-81 307.0 200 70.5
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.6e-80 303.5 246 58.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-79 300.8 285 54.0
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.0e-79 298.9 250 58.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 5.2e-79 298.5 199 69.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.9e-77 292.7 236 59.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 4.9e-77 292.0 249 61.0
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 4.1e-76 288.9 235 58.3
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.6e-75 287.0 206 65.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-75 285.4 252 60.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.0e-74 284.3 252 60.3
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 3.0e-74 282.7 267 57.7
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.0e-74 282.0 252 59.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 5.0e-74 282.0 252 58.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.5e-73 280.4 242 57.0
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-72 277.3 254 59.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 8.1e-72 274.6 235 62.1
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 5.2e-71 271.9 250 54.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.2e-70 270.8 255 54.1
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.4e-68 263.1 335 43.9
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.2e-55 218.8 232 47.4
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 6.4e-53 211.8 228 48.7
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.4e-53 211.8 137 66.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.4e-52 208.8 231 47.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.7e-51 206.5 149 67.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.5e-51 206.1 230 47.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.8e-51 204.9 224 46.9
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.0e-50 203.0 217 51.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.5e-49 199.9 113 80.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-45 186.8 131 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.8e-42 177.2 231 40.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-40 169.9 198 40.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 8.1e-40 168.3 206 43.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.3e-37 161.0 134 53.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.3e-37 161.0 191 47.1
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.9e-37 159.1 277 35.4
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.4e-36 156.8 101 69.3
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 7.9e-35 151.8 233 40.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.5e-33 146.7 209 42.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.9e-28 130.6 247 31.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.8e-26 124.0 304 32.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 8.7e-26 121.7 231 34.2
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-23 114.8 211 36.0
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.4e-22 109.8 353 27.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-21 108.2 261 29.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.0e-21 108.2 136 43.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-18 98.2 134 41.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 8.8e-18 95.1 208 33.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 9.7e-17 91.7 252 28.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.3e-16 91.3 293 27.0
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 6.3e-16 89.0 117 34.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-14 84.7 134 35.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.5e-14 82.8 99 36.4
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-12 77.0 52 65.4
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-12 77.0 52 65.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 5.5e-12 75.9 52 63.5
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 3.0e-10 70.1 48 66.7
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.0e-09 67.4 44 68.2


User provided reference genes

Program Settings