Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.5e-46 187.6 95 100.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.5e-46 187.6 95 100.0
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.5e-38 161.0 88 89.8
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 3.2e-36 154.8 85 88.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 4.2e-36 154.5 89 84.3
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 7.0e-31 137.1 101 69.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 8.5e-29 130.2 92 69.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.9e-28 129.0 94 66.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.2e-28 127.9 78 78.2
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 9.4e-28 126.7 93 63.4
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.6e-27 125.9 88 67.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.6e-27 125.9 91 70.3
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.1e-27 125.6 93 64.5
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.7e-27 125.2 90 67.8
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.6e-27 124.8 89 67.4
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.6e-27 124.8 92 66.3
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.7e-27 124.4 88 71.6
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 4.7e-27 124.4 90 65.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.1e-27 124.0 85 70.6
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 6.1e-27 124.0 82 69.5
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.1e-27 124.0 87 70.1
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 8.0e-27 123.6 88 68.2
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 8.0e-27 123.6 90 67.8
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 8.0e-27 123.6 88 64.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 8.0e-27 123.6 93 67.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 8.0e-27 123.6 85 67.1
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.0e-26 123.2 93 62.4
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.0e-26 123.2 85 68.2
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.4e-26 122.9 92 66.3
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.4e-26 122.9 83 69.9
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.8e-26 122.5 77 72.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.8e-26 122.5 78 71.8
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.3e-26 122.1 85 65.9
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.0e-26 121.7 92 65.2
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.0e-26 121.7 84 67.9
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 4.0e-26 121.3 92 65.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.0e-26 121.3 95 60.0
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.2e-26 120.9 82 69.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 6.7e-26 120.6 90 66.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.8e-26 120.2 87 67.8
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 8.8e-26 120.2 82 65.9
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 8.8e-26 120.2 84 67.9
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.8e-26 120.2 95 58.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 85 63.5
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.5e-25 119.4 82 65.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-25 119.4 84 65.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.5e-25 119.4 81 67.9
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.5e-25 119.4 79 68.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.0e-25 119.0 87 64.4
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.0e-25 119.0 87 64.4
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 2.0e-25 119.0 83 66.3
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-25 119.0 95 57.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.0e-25 119.0 68 79.4
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.6e-25 118.6 88 70.5
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.3e-25 118.2 80 67.5
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.4e-25 117.9 90 66.7
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.4e-25 117.9 84 65.5
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.4e-25 117.9 66 77.3
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 4.4e-25 117.9 80 66.2
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.7e-25 117.5 89 62.9
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 5.7e-25 117.5 73 75.3
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 5.7e-25 117.5 77 72.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.7e-25 117.5 89 62.9
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.7e-25 117.5 92 63.0
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 5.7e-25 117.5 95 63.2
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 7.5e-25 117.1 69 72.5
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 7.5e-25 117.1 95 60.0
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.5e-25 117.1 95 57.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.5e-25 117.1 92 64.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 9.7e-25 116.7 95 60.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 9.7e-25 116.7 89 61.8
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 9.7e-25 116.7 82 68.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 9.7e-25 116.7 82 68.3
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-24 116.3 80 68.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.2e-24 115.5 89 61.8
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.2e-24 115.5 84 64.3
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.8e-24 115.2 89 59.6
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.8e-24 115.2 68 77.9
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.8e-24 114.4 95 61.1
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 6.3e-24 114.0 86 65.1
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 8.2e-24 113.6 69 71.0
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 8.2e-24 113.6 68 77.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 8.2e-24 113.6 97 60.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.1e-23 113.2 81 65.4
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.1e-23 113.2 81 65.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-23 113.2 70 74.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.1e-23 113.2 95 61.1
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.8e-23 112.5 68 73.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-23 112.5 69 71.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.8e-23 112.5 72 72.2
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.8e-23 112.5 75 69.3
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-23 112.1 85 61.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.4e-23 112.1 68 72.1
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.1e-23 111.7 95 56.8
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.1e-23 111.7 72 68.1
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.1e-23 111.3 85 61.2
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.1e-23 111.3 85 61.2
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.1e-23 111.3 72 70.8
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.1e-23 111.3 107 54.2
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 4.1e-23 111.3 73 71.2
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.1e-23 111.3 80 67.5
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.1e-23 111.3 93 59.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.3e-23 110.9 98 56.1
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.3e-23 110.9 98 56.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.3e-23 110.9 80 66.2
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 7.0e-23 110.5 89 59.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 7.0e-23 110.5 86 65.1
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.2e-22 109.8 68 75.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.2e-22 109.8 103 57.3
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-22 109.8 72 66.7
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.0e-22 109.0 71 70.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.0e-22 109.0 77 70.1
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 2.0e-22 109.0 82 63.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.5e-22 108.2 85 62.4
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 3.5e-22 108.2 78 66.7
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 5.9e-22 107.5 66 74.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.7e-22 107.1 93 61.3
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 7.7e-22 107.1 91 57.1
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 7.7e-22 107.1 96 56.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 7.7e-22 107.1 96 56.2
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.0e-21 106.7 77 66.2
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.0e-21 106.7 63 76.2
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.3e-21 106.3 80 65.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.8e-21 104.8 63 73.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 6.5e-21 104.0 68 70.6
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.5e-21 103.6 64 71.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-20 102.1 64 70.3
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.6e-19 99.4 67 70.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.1e-19 99.0 86 59.3
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 6.1e-19 97.4 81 61.7
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.4e-18 96.3 84 58.3
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.8e-18 95.9 64 68.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.3e-18 95.5 68 63.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.3e-18 95.5 68 63.2
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.0e-18 95.1 77 61.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.5e-17 92.8 81 51.9
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.0e-17 92.4 69 62.3
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.6e-17 92.0 73 63.0
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 3.4e-17 91.7 61 67.2
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.4e-17 91.7 64 68.8
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 4.4e-17 91.3 100 51.0
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 4.4e-17 91.3 80 52.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-16 89.7 64 67.2
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.7e-16 89.4 83 55.4
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.8e-16 88.6 61 65.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.7e-16 88.2 56 71.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.8e-15 85.9 67 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 7.0e-15 84.0 63 61.9
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 4.5e-14 81.3 112 41.1
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.0e-13 80.1 58 65.5
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.1e-12 76.6 61 60.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.2e-11 73.2 61 52.5
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.3e-08 63.2 65 46.2
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.2e-08 62.4 42 69.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.7e-08 61.6 34 76.5
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 9.2e-07 57.0 48 62.5
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 3.5e-06 55.1 65 43.1


User provided reference genes

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