Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.6e-59 231.9 119 100.0
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 1.2e-56 223.0 119 95.8
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 3.3e-22 108.6 117 50.4
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 2.4e-20 102.4 117 47.9
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 5.9e-19 97.8 117 47.0
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 8.5e-18 94.0 122 40.2
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 3.2e-17 92.0 119 42.0
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 3.2e-17 92.0 119 42.0
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.2e-16 90.1 119 41.2
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.2e-16 90.1 119 41.2
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-16 89.7 118 40.7
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.1e-16 89.4 121 42.1
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.1e-16 89.4 121 42.1
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.7e-16 89.0 118 41.5
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.6e-16 88.2 118 40.7
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.6e-16 88.2 118 40.7
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.6e-16 88.2 118 40.7
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 6.1e-16 87.8 119 42.0
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 6.1e-16 87.8 119 42.0
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 6.1e-16 87.8 107 43.0
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 7.9e-16 87.4 118 41.5
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 7.9e-16 87.4 121 41.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 7.9e-16 87.4 115 41.7
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-15 87.0 118 39.8
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-15 87.0 118 39.8
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 1.0e-15 87.0 119 41.2
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 1.0e-15 87.0 119 41.2
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.4e-15 86.7 121 40.5
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 2.3e-15 85.9 118 39.8
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.0e-15 85.5 121 41.3
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 3.9e-15 85.1 120 43.3
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.9e-15 85.1 121 39.7
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 5.1e-15 84.7 118 40.7
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 6.7e-15 84.3 121 40.5
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 1.1e-14 83.6 118 40.7
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.0e-14 82.8 121 40.5
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.5e-14 82.4 119 40.3
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 3.3e-14 82.0 121 40.5
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 9.7e-14 80.5 119 42.0
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 1.3e-13 80.1 118 33.1
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.8e-13 79.0 119 39.5
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 2.8e-13 79.0 121 38.0
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 4.8e-13 78.2 118 38.1
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 6.3e-13 77.8 116 36.2
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 8.2e-13 77.4 99 40.4
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 8.2e-13 77.4 118 33.1
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.1e-12 77.0 123 40.7
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 3.1e-12 75.5 119 36.1
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 3.1e-12 75.5 117 39.3
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 4.1e-12 75.1 122 37.7
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 4.1e-12 75.1 113 39.8
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.1e-12 75.1 116 37.9
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.1e-12 75.1 121 33.9
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 5.3e-12 74.7 120 35.8
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 5.3e-12 74.7 119 35.3
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 9.1e-12 73.9 120 35.8
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.5e-11 73.2 119 34.5
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 2.6e-11 72.4 121 34.7
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.6e-11 72.4 118 35.6
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 3.4e-11 72.0 120 35.8
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.4e-11 72.0 99 34.3
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.4e-11 72.0 119 33.6
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.4e-11 72.0 116 36.2
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 4.5e-11 71.6 117 36.8
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 5.9e-11 71.2 99 34.3
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 7.7e-11 70.9 121 34.7
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.7e-11 70.9 99 34.3
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 2.2e-10 69.3 121 33.9
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 2.2e-10 69.3 121 33.9
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.2e-10 69.3 99 33.3
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 6.5e-10 67.8 121 33.9
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 6.5e-10 67.8 118 31.4
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 6.5e-10 67.8 118 31.4
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 8.5e-10 67.4 98 33.7
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-09 66.6 98 33.7
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.4e-09 66.6 119 34.5
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 1.4e-09 66.6 116 36.2
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.9e-09 66.2 121 33.1
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.9e-09 66.2 121 32.2
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 1.9e-09 66.2 120 36.7
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 2.5e-09 65.9 120 36.7
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 7.2e-09 64.3 114 35.1
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.2e-08 63.5 116 35.3
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.6e-08 63.2 118 33.9
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 2.1e-08 62.8 119 34.5
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 2.7e-08 62.4 116 32.8
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 4.7e-08 61.6 100 32.0
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 4.7e-08 61.6 120 30.8
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 6.1e-08 61.2 120 34.2
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 7.9e-08 60.8 118 29.7
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 7.9e-08 60.8 104 30.8
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 1.4e-07 60.1 118 36.4
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 2.3e-07 59.3 56 53.6
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.3e-07 59.3 116 33.6
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 5.1e-07 58.2 119 30.3
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 8.8e-07 57.4 119 28.6
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 7.4e-06 54.3 117 30.8


User provided reference genes

Program Settings