Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023270 Chenopodium quinoa HOM05D000889 ORTHO05D000693 9.1e-47 189.9 96 100.0
AUR62009033 Chenopodium quinoa HOM05D000889 ORTHO05D000693 2.0e-38 162.2 96 87.5
EL10Ac2g04535 Beta vulgaris HOM05D000889 ORTHO05D000693 1.2e-27 126.3 96 69.8
Ah.16g101560 Amaranthus hybridus HOM05D000889 ORTHO05D000693 1.9e-23 112.5 98 58.2
EL10Ac2g04533 Beta vulgaris HOM05D000889 ORTHO05D000693 3.2e-15 85.1 98 52.0
Ah.10g037650 Amaranthus hybridus HOM05D000889 ORTHO05D000693 1.5e-12 76.3 90 50.0
AUR62023268 Chenopodium quinoa HOM05D000889 ORTHO05D000693 1.5e-12 76.3 98 48.0
AUR62009037 Chenopodium quinoa HOM05D000889 ORTHO05D000693 1.9e-12 75.9 98 46.9
AUR62009035 Chenopodium quinoa HOM05D000889 ORTHO05D000693 2.5e-12 75.5 98 45.9
CiPaw.03G064600 Carya illinoinensis HOM05D000889 ORTHO05D000693 5.6e-12 74.3 92 43.5
EL10Ac2g04531 Beta vulgaris HOM05D000889 ORTHO05D000693 7.3e-12 73.9 95 47.4
Sc10g0001070 Simmondsia chinensis HOM05D000889 ORTHO05D000693 9.6e-12 73.6 95 46.3
Cfa007894 Carpinus fangiana HOM05D000889 ORTHO05D000693 4.7e-11 71.2 81 46.9
AUR62009036 Chenopodium quinoa HOM05D000889 ORTHO05D000693 1.1e-10 70.1 90 45.6
AUR62023269 Chenopodium quinoa HOM05D000889 ORTHO05D000693 1.4e-10 69.7 98 45.9
Rhsim10G0070600 Rhododendron simsii HOM05D000889 ORTHO05D000693 2.4e-10 68.9 83 49.4
Lsat_1_v5_gn_8_142881 Lactuca sativa HOM05D000889 ORTHO05D000693 5.2e-10 67.8 95 43.2
CAN.G625.48 Capsicum annuum HOM05D000889 ORTHO05D000693 8.9e-10 67.0 69 49.3
ECA232G1876 Erigeron canadensis HOM05D000889 ORTHO05D000693 8.9e-10 67.0 88 44.3
Rhsim10G0072400 Rhododendron simsii HOM05D000889 ORTHO05D000693 8.9e-10 67.0 87 47.1
HanXRQChr17g0559421 Helianthus annuus HOM05D000889 ORTHO05D000693 1.5e-09 66.2 87 42.5
Rhsim10G0070000 Rhododendron simsii HOM05D000889 ORTHO05D000693 2.0e-09 65.9 84 46.4
Ciclev10013188m.g Citrus clementina HOM05D000889 ORTHO05D000693 4.4e-09 64.7 86 41.9
Sc11g0008470 Simmondsia chinensis HOM05D000889 ORTHO05D000693 4.4e-09 64.7 98 38.8
CSS0020161 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 5.8e-09 64.3 95 40.0
CSS0047424 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 5.8e-09 64.3 95 40.0
Haze_14183 Corylus avellana HOM05D000889 ORTHO05D000693 7.6e-09 63.9 87 41.4
THA.LOC104809836 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 7.6e-09 63.9 87 42.5
CAN.G625.50 Capsicum annuum HOM05D000889 ORTHO05D000693 9.9e-09 63.5 87 40.2
Hma1.2p1_0976F.1_g243290 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 9.9e-09 63.5 96 40.6
PGR004G0990 Punica granatum HOM05D000889 ORTHO05D000693 9.9e-09 63.5 97 44.3
TPR.G19304 Trifolium pratense HOM05D000889 ORTHO05D000693 9.9e-09 63.5 87 44.8
CAN.G82.23 Capsicum annuum HOM05D000889 ORTHO05D000693 1.3e-08 63.2 71 49.3
ECA233G1030 Erigeron canadensis HOM05D000889 ORTHO05D000693 1.3e-08 63.2 81 40.7
Oeu012579.1 Olea europaea HOM05D000889 ORTHO05D000693 1.3e-08 63.2 85 42.4
Rhsim10G0070900 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.3e-08 63.2 87 42.5
RhsimUnG0245900 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.3e-08 63.2 87 42.5
Glyma.18G294200 Glycine max HOM05D000889 ORTHO05D000693 1.7e-08 62.8 81 40.7
CAN.G625.49 Capsicum annuum HOM05D000889 ORTHO05D000693 2.2e-08 62.4 87 39.1
Sopen02g030990 Solanum pennellii HOM05D000889 ORTHO05D000693 2.2e-08 62.4 71 47.9
CSS0004186 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 2.9e-08 62.0 93 39.8
CsaV3_5G013890 Cucumis sativus L. HOM05D000889 ORTHO05D000693 2.9e-08 62.0 72 43.1
Lsat_1_v5_gn_8_142920 Lactuca sativa HOM05D000889 ORTHO05D000693 2.9e-08 62.0 86 41.9
PGSC0003DMG400021763 Solanum tuberosum HOM05D000889 ORTHO05D000693 2.9e-08 62.0 71 47.9
Ciclev10013191m.g Citrus clementina HOM05D000889 ORTHO05D000693 3.8e-08 61.6 84 41.7
Manes.01G112600 Manihot esculenta HOM05D000889 ORTHO05D000693 3.8e-08 61.6 89 41.6
Medtr7g082640 Medicago truncatula HOM05D000889 ORTHO05D000693 6.4e-08 60.8 95 43.2
Prupe.3G147800 Prunus persica HOM05D000889 ORTHO05D000693 6.4e-08 60.8 87 41.4
RcHm_v2.0_Chr7g0179471 Rosa chinensis HOM05D000889 ORTHO05D000693 6.4e-08 60.8 85 43.5
ECA238G0180 Erigeron canadensis HOM05D000889 ORTHO05D000693 8.4e-08 60.5 86 41.9
HanXRQChr07g0193801 Helianthus annuus HOM05D000889 ORTHO05D000693 8.4e-08 60.5 84 38.1
Sopen03g007190 Solanum pennellii HOM05D000889 ORTHO05D000693 8.4e-08 60.5 71 46.5
Glyma.05G002200 Glycine max HOM05D000889 ORTHO05D000693 1.1e-07 60.1 93 44.1
Glyma.19G002300 Glycine max HOM05D000889 ORTHO05D000693 1.1e-07 60.1 93 44.1
Aa31LG2G3320 Aethionema arabicum HOM05D000889 ORTHO05D000693 1.4e-07 59.7 72 41.7
CANSAT78G1714 Cannabis sativa HOM05D000889 ORTHO05D000693 1.4e-07 59.7 95 38.9
PSO017G4805 Papaver somniferum HOM05D000889 ORTHO05D000693 1.4e-07 59.7 90 36.7
Peaxi162Scf00104g01410 Petunia axillaris HOM05D000889 ORTHO05D000693 1.4e-07 59.7 98 39.8
Sed0014311 Sechium edule HOM05D000889 ORTHO05D000693 1.4e-07 59.7 81 44.4
MBI07_g30209_MAGBIO Magnolia biondii HOM05D000889 ORTHO05D000693 2.4e-07 58.9 86 38.4
PGSC0003DMG400026381 Solanum tuberosum HOM05D000889 ORTHO05D000693 2.4e-07 58.9 96 39.6
BraA07t30993Z Brassica rapa HOM05D000889 ORTHO05D000693 3.2e-07 58.5 90 35.6
Thhalv10011892m.g Eutrema salsugineum HOM05D000889 ORTHO05D000693 3.2e-07 58.5 91 35.2
Oeu039738.1 Olea europaea HOM05D000889 ORTHO05D000693 3.2e-07 58.5 88 42.0
CiPaw.05G241500 Carya illinoinensis HOM05D000889 ORTHO05D000693 4.2e-07 58.2 91 40.7
Hma1.2p1_0075F.1_g039330 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 4.2e-07 58.2 87 41.4
Rhsim10G0071300 Rhododendron simsii HOM05D000889 ORTHO05D000693 4.2e-07 58.2 84 41.7
Sopen03g007160 Solanum pennellii HOM05D000889 ORTHO05D000693 4.2e-07 58.2 91 36.3
A07p33650 Brassica napus HOM05D000889 ORTHO05D000693 5.4e-07 57.8 90 35.6
Glyma.10G132500 Glycine max HOM05D000889 ORTHO05D000693 5.4e-07 57.8 81 42.0
HanXRQChr14g0450831 Helianthus annuus HOM05D000889 ORTHO05D000693 5.4e-07 57.8 89 36.0
Lsat_1_v5_gn_8_143020 Lactuca sativa HOM05D000889 ORTHO05D000693 5.4e-07 57.8 87 39.1
PGR042G0557 Punica granatum HOM05D000889 ORTHO05D000693 5.4e-07 57.8 90 40.0
PGR042G2741 Punica granatum HOM05D000889 ORTHO05D000693 5.4e-07 57.8 82 41.5
arahy.Tifrunner.gnm1.ann1.9KYY6V Arachis hypogaea HOM05D000889 ORTHO05D000693 7.1e-07 57.4 83 38.6
C02p22130 Brassica napus HOM05D000889 ORTHO05D000693 7.1e-07 57.4 90 35.6
BolC2t08349H Brassica oleracea HOM05D000889 ORTHO05D000693 7.1e-07 57.4 90 35.6
Hma1.2p1_0348F.1_g131930 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 7.1e-07 57.4 69 43.5
Lsat_1_v5_gn_8_142961 Lactuca sativa HOM05D000889 ORTHO05D000693 7.1e-07 57.4 85 40.0
Psat3g097600 Pisum sativum HOM05D000889 ORTHO05D000693 7.1e-07 57.4 98 36.7
Solyc03g034334.1 Solanum lycopersicum HOM05D000889 ORTHO05D000693 7.1e-07 57.4 86 38.4
BcaC08g46128 Brassica carinata HOM05D000889 ORTHO05D000693 9.3e-07 57.0 90 34.4
BolC6t39107H Brassica oleracea HOM05D000889 ORTHO05D000693 9.3e-07 57.0 90 34.4
Rhsim10G0071200 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.3e-07 57.0 84 40.5
THA.LOC104805971 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 9.3e-07 57.0 85 38.8
COL.COLO4_09369 Corchorus olitorius HOM05D000889 ORTHO05D000693 1.2e-06 56.6 84 40.5
Lalb_Chr06g0176721 Lupinus albus HOM05D000889 ORTHO05D000693 1.2e-06 56.6 65 46.2
MSTRG.2831 Avicennia marina HOM05D000889 ORTHO05D000693 1.6e-06 56.2 92 41.3
MELO3C010393.2 Cucumis melo HOM05D000889 ORTHO05D000693 1.6e-06 56.2 84 41.7
Dinv33963 Davidia involucrata HOM05D000889 ORTHO05D000693 1.6e-06 56.2 103 34.0
Hma1.2p1_0500F.1_g167240 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 1.6e-06 56.2 88 39.8
Hma1.2p1_1109F.1_g258245 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 1.6e-06 56.2 88 39.8
Lj1g0016049 Lotus japonicus HOM05D000889 ORTHO05D000693 1.6e-06 56.2 85 40.0
Sabra04G0065200 Salix brachista HOM05D000889 ORTHO05D000693 1.6e-06 56.2 67 43.3
Sc10g0009400 Simmondsia chinensis HOM05D000889 ORTHO05D000693 1.6e-06 56.2 85 38.8
Sopen03g007230 Solanum pennellii HOM05D000889 ORTHO05D000693 1.6e-06 56.2 92 39.1
AL2G25060 Arabidopsis lyrata HOM05D000889 ORTHO05D000693 2.1e-06 55.8 63 44.4
BcaB05g24199 Brassica carinata HOM05D000889 ORTHO05D000693 2.1e-06 55.8 90 36.7
BcaC03g14767 Brassica carinata HOM05D000889 ORTHO05D000693 2.1e-06 55.8 90 35.6
COL.COLO4_09367 Corchorus olitorius HOM05D000889 ORTHO05D000693 2.1e-06 55.8 83 37.3
ECA246G2068 Erigeron canadensis HOM05D000889 ORTHO05D000693 2.1e-06 55.8 95 36.8
MD13G1035400 Malus domestica HOM05D000889 ORTHO05D000693 2.1e-06 55.8 86 37.2
Cc07_g08570 Coffea canephora HOM05D000889 ORTHO05D000693 2.7e-06 55.5 84 36.9
HanXRQChr07g0193821 Helianthus annuus HOM05D000889 ORTHO05D000693 2.7e-06 55.5 69 39.1
Carub.0005s1255 Capsella rubella HOM05D000889 ORTHO05D000693 3.5e-06 55.1 90 36.7
Cfa007896 Carpinus fangiana HOM05D000889 ORTHO05D000693 3.5e-06 55.1 83 38.6
MD09G1255700 Malus domestica HOM05D000889 ORTHO05D000693 3.5e-06 55.1 85 38.8
Sp5g21840 Schrenkiella parvula HOM05D000889 ORTHO05D000693 3.5e-06 55.1 100 37.0
THA.LOC104805584 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 3.5e-06 55.1 83 37.3
A02p13760 Brassica napus HOM05D000889 ORTHO05D000693 4.6e-06 54.7 90 35.6
BraA02t06433Z Brassica rapa HOM05D000889 ORTHO05D000693 4.6e-06 54.7 90 35.6
Migut.E00367 Erythranthe guttata HOM05D000889 ORTHO05D000693 4.6e-06 54.7 93 39.8
Lalb_Chr04g0257621 Lupinus albus HOM05D000889 ORTHO05D000693 4.6e-06 54.7 79 38.0
THA.LOC104805972 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 4.6e-06 54.7 83 37.3
CsaV3_1G004000 Cucumis sativus L. HOM05D000889 ORTHO05D000693 6.0e-06 54.3 65 40.0
Thhalv10019362m.g Eutrema salsugineum HOM05D000889 ORTHO05D000693 6.0e-06 54.3 95 37.9
SalBow8G1049 Salvia bowleyana HOM05D000889 ORTHO05D000693 6.0e-06 54.3 85 38.8
Carub.0005s1254 Capsella rubella HOM05D000889 ORTHO05D000693 7.8e-06 53.9 79 34.2
CARHR214490 Cardamine hirsuta HOM05D000889 ORTHO05D000693 7.8e-06 53.9 67 38.8
Lsat_1_v5_gn_3_80601 Lactuca sativa HOM05D000889 ORTHO05D000693 7.8e-06 53.9 94 34.0


User provided reference genes

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