Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 3.9e-157 558.1 291 100.0
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 2.1e-147 525.8 291 93.1
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.8e-101 373.2 295 67.8
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 4.9e-43 179.1 292 42.1
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.3e-39 166.4 306 36.9
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 2.4e-37 160.2 293 37.5
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 4.0e-37 159.5 284 39.1
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 5.2e-37 159.1 287 37.3
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.5e-36 157.5 283 37.8
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 4.4e-36 156.0 297 36.0
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 5.8e-36 155.6 294 37.1
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 1.3e-35 154.5 278 38.1
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 2.2e-35 153.7 281 37.7
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 6.4e-35 152.1 307 36.2
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 8.4e-35 151.8 299 36.1
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.4e-34 151.0 337 36.5
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 1.9e-34 150.6 309 36.2
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 7.1e-34 148.7 306 34.6
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 6.0e-33 145.6 285 35.4
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 7.8e-33 145.2 314 34.4
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 1.0e-32 144.8 278 37.1
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 3.0e-32 143.3 283 33.6
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 5.1e-32 142.5 276 36.2
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 6.6e-32 142.1 251 38.2
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 6.6e-32 142.1 281 36.3
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.5e-31 141.0 288 37.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 1.5e-31 141.0 319 34.5
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.9e-31 140.6 302 35.8
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.9e-31 140.6 283 34.3
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.9e-31 140.6 283 34.3
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.5e-31 140.2 280 34.6
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.5e-31 140.2 284 34.2
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 2.5e-31 140.2 289 38.4
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 3.3e-31 139.8 294 36.7
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 7.3e-31 138.7 293 35.5
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 1.3e-30 137.9 298 33.6
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.8e-30 136.0 281 35.2
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.2e-30 135.6 298 34.6
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 6.2e-30 135.6 286 32.9
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 8.1e-30 135.2 290 37.9
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.8e-29 134.0 281 31.7
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.8e-29 134.0 260 38.1
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.8e-29 134.0 285 33.7
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 2.4e-29 133.7 280 33.9
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 5.3e-29 132.5 311 33.4
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 6.9e-29 132.1 279 33.7
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 9.0e-29 131.7 278 33.8
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.2e-28 131.3 293 35.5
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 2.0e-28 130.6 283 34.3
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 2.0e-28 130.6 280 35.4
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 3.4e-28 129.8 308 33.1
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 4.4e-28 129.4 283 34.6
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 4.4e-28 129.4 288 35.4
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 4.4e-28 129.4 289 32.9
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 4.4e-28 129.4 308 36.4
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 5.8e-28 129.0 296 34.5
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 7.6e-28 128.6 294 33.0
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.3e-27 127.9 281 34.2
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 2.9e-27 126.7 282 35.5
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 3.8e-27 126.3 276 35.5
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 4.9e-27 125.9 282 34.4
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 8.4e-27 125.2 297 34.7
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 2.4e-26 123.6 288 34.7
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.4e-26 123.6 290 35.2
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 4.2e-26 122.9 305 31.5
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 5.4e-26 122.5 258 35.7
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 5.4e-26 122.5 283 33.9
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 7.1e-26 122.1 281 31.3
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.2e-25 121.3 276 34.8
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.2e-25 121.3 281 31.0
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.6e-25 120.9 284 33.5
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 3.5e-25 119.8 317 29.7
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 6.0e-25 119.0 282 32.6
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.0e-25 119.0 307 29.3
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 6.0e-25 119.0 290 35.5
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 7.8e-25 118.6 287 33.4
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 1.3e-24 117.9 278 33.5
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 2.3e-24 117.1 300 31.7
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 3.0e-24 116.7 246 34.1
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 3.9e-24 116.3 274 30.3
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 6.6e-24 115.5 258 34.5
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 8.7e-24 115.2 308 32.1
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.1e-23 114.8 300 31.3
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.9e-23 114.0 249 32.5
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 2.5e-23 113.6 228 36.0
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 3.3e-23 113.2 274 31.4
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 3.3e-23 113.2 285 34.7
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 5.6e-23 112.5 298 31.5
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 5.6e-23 112.5 298 31.5
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.3e-22 111.3 236 32.2
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-22 110.5 277 33.9
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 3.6e-22 109.8 287 30.7
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.1e-21 108.2 295 33.6
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 2.4e-21 107.1 275 28.4
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 5.4e-18 95.9 287 30.3
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 1.3e-16 91.3 294 28.9
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 5.1e-16 89.4 282 28.7
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.8e-14 83.6 236 31.4
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 2.8e-14 83.6 236 28.8
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.4e-13 81.3 181 29.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.4e-13 81.3 181 29.3
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 2.4e-13 80.5 239 29.3
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 3.1e-13 80.1 125 39.2
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.5e-12 77.8 91 40.7
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 5.8e-12 75.9 317 28.1
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 4.9e-11 72.8 297 27.3
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.1e-10 71.6 107 35.5
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 1.4e-10 71.2 300 26.3
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 3.2e-10 70.1 305 25.2
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 4.2e-10 69.7 301 26.6
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 9.3e-10 68.6 311 26.7
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 9.3e-10 68.6 300 28.0
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 1.2e-09 68.2 305 25.9
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 1.6e-09 67.8 297 26.6
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 2.7e-09 67.0 305 24.6
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 2.7e-09 67.0 306 27.1
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 6.0e-09 65.9 305 24.3
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 6.0e-09 65.9 305 24.3
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 7.9e-09 65.5 302 25.8
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 1.3e-08 64.7 305 24.3
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.3e-08 64.7 339 24.8
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 5.1e-08 62.8 276 27.5
TPR.G19397 Trifolium pratense HOM05D002440 ORTHO05D002576 5.1e-08 62.8 308 26.9
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 8.7e-08 62.0 312 26.6
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 1.1e-07 61.6 305 26.9
PGR031G3124 Punica granatum HOM05D002440 ORTHO05D002576 1.5e-07 61.2 296 27.4
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 1.9e-07 60.8 318 27.0
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.9e-07 60.8 301 26.2
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 1.9e-07 60.8 319 26.0
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 3.3e-07 60.1 328 27.7
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 4.3e-07 59.7 308 24.7
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 5.7e-07 59.3 310 25.8
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 7.4e-07 58.9 310 24.8
unitig_26.g9742 Utricularia gibba HOM05D002440 ORTHO05D002576 7.4e-07 58.9 292 25.7
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 9.6e-07 58.5 301 24.9
MD01G1069200 Malus domestica HOM05D002440 ORTHO05D002576 9.6e-07 58.5 298 25.2
Nn1g01638 Nelumbo nucifera HOM05D002440 ORTHO05D002576 9.6e-07 58.5 310 26.5
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 9.6e-07 58.5 312 27.6
CARHR000810 Cardamine hirsuta HOM05D002440 ORTHO05D002576 1.3e-06 58.2 296 24.7
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 1.3e-06 58.2 309 26.2
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 2.8e-06 57.0 298 27.9
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 2.8e-06 57.0 310 23.5
Oeu018967.1 Olea europaea HOM05D002440 ORTHO05D002576 2.8e-06 57.0 305 26.2
vmacro20908 Vaccinium macrocarpon HOM05D002440 ORTHO05D002576 3.7e-06 56.6 301 24.6
CiPaw.02G033700 Carya illinoinensis HOM05D002440 ORTHO05D002576 4.8e-06 56.2 326 25.5
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 4.8e-06 56.2 302 22.8
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 4.8e-06 56.2 315 26.0
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 6.2e-06 55.8 314 25.2
VMungo1383G0515 Vigna mungo HOM05D002440 ORTHO05D002576 8.2e-06 55.5 301 25.6


User provided reference genes

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