Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.1e-29 131.7 68 100.0
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.8e-26 120.6 68 92.6
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.2e-22 106.7 68 83.8
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.2e-21 105.9 65 83.1
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.4e-12 75.9 58 63.8
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.5e-11 72.4 58 63.8
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.3e-10 69.3 57 59.6
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.3e-10 69.3 57 59.6
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.7e-10 68.9 60 56.7
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 2.8e-10 68.2 60 60.0
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.8e-10 68.2 53 62.3
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.7e-10 67.8 54 61.1
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 4.8e-10 67.4 54 59.3
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 4.8e-10 67.4 64 57.8
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.8e-10 67.4 55 61.8
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 6.3e-10 67.0 63 57.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 6.3e-10 67.0 54 63.0
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 6.3e-10 67.0 64 53.1
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 8.3e-10 66.6 58 56.9
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 8.3e-10 66.6 54 63.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.4e-09 65.9 53 64.2
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.4e-09 65.9 67 53.7
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.8e-09 65.5 58 58.6
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.1e-09 64.7 54 61.1
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.1e-09 64.7 54 57.4
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 3.1e-09 64.7 60 56.7
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 3.1e-09 64.7 54 59.3
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.1e-09 64.3 60 55.0
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 5.4e-09 63.9 58 56.9
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.4e-09 63.9 54 59.3
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.4e-09 63.9 54 59.3
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 7.0e-09 63.5 58 55.2
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 7.0e-09 63.5 54 59.3
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 7.0e-09 63.5 54 59.3
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 7.0e-09 63.5 53 62.3
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 7.0e-09 63.5 53 62.3
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.0e-09 63.5 58 58.6
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 9.1e-09 63.2 60 53.3
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 9.1e-09 63.2 59 55.9
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 9.1e-09 63.2 60 58.3
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 9.1e-09 63.2 53 58.5
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.2e-08 62.8 58 53.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.2e-08 62.8 59 54.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.2e-08 62.8 58 53.4
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.2e-08 62.8 51 58.8
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.6e-08 62.4 54 57.4
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.6e-08 62.4 67 47.8
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.6e-08 62.4 67 47.8
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 63 54.0
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 63 54.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 58 56.9
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 2.0e-08 62.0 58 55.2
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 2.0e-08 62.0 58 51.7
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.0e-08 62.0 53 60.4
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.0e-08 62.0 58 56.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.7e-08 61.6 67 52.2
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 2.7e-08 61.6 66 53.0
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.7e-08 61.6 63 54.0
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.7e-08 61.6 63 54.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.7e-08 61.6 52 59.6
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.7e-08 61.6 58 51.7
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.7e-08 61.6 52 59.6
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.7e-08 61.6 52 59.6
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 3.5e-08 61.2 51 56.9
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 3.5e-08 61.2 53 54.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.5e-08 61.2 58 53.4
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.5e-08 61.2 54 55.6
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.5e-08 61.2 54 55.6
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 4.5e-08 60.8 66 53.0
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 4.5e-08 60.8 66 53.0
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 4.5e-08 60.8 66 53.0
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.5e-08 60.8 52 59.6
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.5e-08 60.8 61 50.8
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.5e-08 60.8 54 59.3
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 4.5e-08 60.8 58 53.4
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.5e-08 60.8 59 52.5
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.9e-08 60.5 53 60.4
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.9e-08 60.5 53 60.4
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.9e-08 60.5 53 56.6
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.7e-08 60.1 54 57.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 7.7e-08 60.1 58 51.7
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 7.7e-08 60.1 58 53.4
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.0e-07 59.7 52 59.6
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.0e-07 59.7 49 61.2
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-07 59.7 59 50.8
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-07 59.3 53 58.5
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.3e-07 59.3 53 54.7
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.3e-07 59.3 54 55.6
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.3e-07 59.3 54 57.4
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.3e-07 59.3 63 54.0
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.3e-07 59.3 58 50.0
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.7e-07 58.9 64 50.0
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 53.4
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.7e-07 58.9 64 50.0
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.7e-07 58.9 51 54.9
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.7e-07 58.9 52 55.8
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 50.0
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.3e-07 58.5 64 50.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.3e-07 58.5 60 53.3
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 51.7
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.3e-07 58.5 64 50.0
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-07 58.5 59 49.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-07 58.5 59 49.2
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 51.7
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 51.7
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 2.3e-07 58.5 59 55.9
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.3e-07 58.5 58 50.0
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.9e-07 58.2 59 49.2
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.9e-07 58.2 54 51.9
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 3.8e-07 57.8 64 50.0
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 5.0e-07 57.4 54 55.6
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 5.0e-07 57.4 54 55.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.0e-07 57.4 58 50.0
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 5.0e-07 57.4 58 50.0
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.0e-07 57.4 53 50.9
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.0e-07 57.4 59 54.2
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.6e-07 57.0 58 51.7
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 8.6e-07 56.6 58 51.7
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 8.6e-07 56.6 58 50.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 8.6e-07 56.6 54 50.0
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.1e-06 56.2 54 48.1
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.5e-06 55.8 58 50.0
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.9e-06 55.5 64 48.4
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.9e-06 55.5 54 50.0
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.9e-06 55.5 54 50.0
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 2.5e-06 55.1 53 50.9
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.5e-06 55.1 52 55.8
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.5e-06 53.9 52 55.8
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.2e-06 53.5 51 52.9
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 9.5e-06 53.1 59 54.2
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 9.5e-06 53.1 53 50.9
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 9.5e-06 53.1 50 50.0
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 9.5e-06 53.1 51 52.9


User provided reference genes

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