Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 5.0e-137 491.1 249 100.0
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.1e-127 457.6 249 93.2
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.2e-120 434.9 258 90.3
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.2e-108 396.0 245 80.8
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 8.3e-100 367.5 251 74.9
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.0e-93 346.3 241 70.1
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 7.5e-93 344.4 247 69.2
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.7e-90 335.9 216 73.6
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 2.7e-90 335.9 247 66.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.5e-90 335.5 214 76.2
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 6.0e-90 334.7 241 70.1
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 7.8e-90 334.3 220 73.2
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.3e-89 333.6 246 65.9
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.3e-89 333.6 214 75.7
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.7e-89 333.2 214 74.8
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 3.0e-89 332.4 248 64.9
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.9e-89 332.0 239 68.6
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.9e-89 332.0 240 68.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 5.0e-89 331.6 241 69.7
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 6.6e-89 331.3 214 74.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.6e-89 331.3 239 68.6
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.6e-89 330.9 214 74.8
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.1e-88 330.5 212 73.6
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.9e-88 329.7 214 74.3
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.9e-88 329.7 233 68.7
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.5e-88 329.3 228 70.6
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.5e-88 329.3 217 72.4
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 4.3e-88 328.6 236 67.8
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 4.3e-88 328.6 241 68.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.6e-88 328.2 214 74.8
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 5.6e-88 328.2 220 71.4
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 7.3e-88 327.8 211 75.8
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 9.5e-88 327.4 219 72.6
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 9.5e-88 327.4 239 67.8
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.2e-87 327.0 239 67.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.6e-87 326.6 214 74.3
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 1.6e-87 326.6 228 70.2
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.6e-87 326.6 212 72.6
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.1e-87 326.2 245 65.3
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 2.1e-87 326.2 240 67.5
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.1e-87 326.2 214 72.9
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.6e-87 325.5 219 72.6
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.6e-87 325.5 239 66.5
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 6.2e-87 324.7 247 66.4
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.1e-87 324.3 217 71.4
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.1e-86 323.9 214 71.5
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.1e-86 323.9 237 65.8
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.1e-86 323.9 214 74.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-86 323.9 214 74.3
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.8e-86 323.2 237 67.9
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.3e-86 322.8 211 74.9
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 4.0e-86 322.0 217 70.0
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 5.2e-86 321.6 207 75.4
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 5.2e-86 321.6 212 72.2
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.0e-85 319.7 227 67.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.0e-85 319.7 214 71.0
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.6e-85 319.3 238 67.2
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.6e-85 319.3 211 73.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.4e-85 318.9 230 68.7
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.4e-85 318.5 233 67.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.8e-85 318.2 237 65.8
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 5.8e-85 318.2 204 75.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.8e-85 318.2 205 74.6
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 5.8e-85 318.2 223 68.2
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 7.5e-85 317.8 237 65.8
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 9.9e-85 317.4 228 67.5
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.3e-84 317.0 236 66.9
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.3e-84 317.0 251 62.5
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.3e-84 317.0 222 69.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-84 316.6 228 68.0
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.7e-84 316.6 217 69.1
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.2e-84 316.2 241 66.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 2.9e-84 315.8 237 66.7
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.9e-84 315.1 207 72.5
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 6.4e-84 314.7 251 61.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.1e-83 313.9 236 65.7
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.4e-83 313.5 237 66.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.9e-83 313.2 245 64.5
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.4e-83 312.8 217 70.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 5.4e-83 311.6 234 65.4
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.4e-83 311.6 236 65.3
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 5.4e-83 311.6 237 64.1
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.2e-82 310.5 213 68.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.7e-82 309.3 211 70.6
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.3e-81 307.0 248 62.9
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-81 306.6 227 66.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.3e-81 306.2 208 69.2
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.9e-81 305.4 207 71.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 8.6e-81 304.3 237 64.6
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 8.6e-81 304.3 227 65.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.9e-80 303.1 231 65.8
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.5e-80 302.8 215 69.8
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 5.6e-80 301.6 215 68.8
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.6e-79 300.1 204 71.1
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.1e-79 299.7 227 65.2
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 6.2e-79 298.1 237 62.9
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.1e-78 297.4 215 67.9
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.4e-78 297.0 236 63.6
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.4e-78 297.0 205 71.2
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.8e-78 296.6 248 62.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.8e-78 294.7 214 67.3
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.5e-77 293.5 200 70.0
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.5e-77 293.5 214 66.8
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.5e-77 293.5 242 61.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.9e-75 286.6 185 71.9
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.2e-74 283.9 210 66.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 7.8e-74 281.2 249 55.0
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.5e-72 276.9 208 62.5
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.4e-70 269.6 196 66.8
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.4e-70 269.6 207 63.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 7.6e-69 264.6 209 61.7
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.2e-68 263.1 206 63.6
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 6.4e-68 261.5 220 55.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 6.6e-65 251.5 215 57.2
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.5e-61 240.4 211 55.5
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.9e-59 233.4 166 70.5
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 5.4e-59 231.9 211 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.3e-57 227.3 209 51.7
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.0e-54 214.5 181 62.4
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.6e-53 213.0 210 51.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 4.5e-53 212.2 258 42.6
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.8e-52 209.1 161 65.8
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 4.2e-51 205.7 198 52.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 5.5e-51 205.3 167 64.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 5.6e-48 195.3 233 40.8
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 5.3e-46 188.7 139 69.8
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 5.8e-45 185.3 117 72.6
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.5e-40 170.6 111 74.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.4e-38 164.1 212 41.0
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.4e-29 132.9 112 63.4
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.8e-28 129.4 78 82.1
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.8e-28 129.4 130 54.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.8e-22 110.5 115 54.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.4e-22 110.2 144 38.9
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 5.0e-20 102.4 94 51.1
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 2.8e-15 86.7 93 51.6
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.9e-11 73.9 46 76.1
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.7e-10 70.1 261 28.7
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.8e-09 67.4 58 58.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 1.3e-07 61.2 60 53.3


User provided reference genes

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