Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.3e-256 887.9 443 100.0
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.6e-120 436.4 445 59.6
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.3e-108 396.7 464 47.4
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.2e-85 321.2 492 38.6
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.5e-83 313.5 485 38.8
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.5e-83 313.5 485 38.8
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.7e-82 309.7 529 36.9
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.1e-81 308.1 531 36.2
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.4e-81 307.8 498 38.4
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 2.6e-80 303.5 539 35.4
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.3e-79 301.2 449 39.2
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.7e-79 300.8 448 39.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 4.2e-78 296.2 468 38.9
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 7.1e-78 295.4 554 34.3
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 2.1e-77 293.9 531 34.7
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 3.3e-75 286.6 533 36.0
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.7e-75 285.8 522 34.7
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 8.2e-74 282.0 505 34.7
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.1e-73 281.6 471 38.2
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-73 281.6 502 35.7
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.4e-73 280.4 535 35.9
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.1e-73 280.0 498 35.7
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.2e-72 278.1 468 36.8
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.6e-72 276.9 588 32.5
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.4e-72 276.6 497 35.4
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 5.8e-72 275.8 474 36.1
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.8e-72 275.8 474 36.1
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 7.6e-72 275.4 441 38.1
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.8e-71 273.1 464 36.2
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.1e-70 271.6 524 34.9
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.9e-70 270.8 501 32.9
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.9e-70 270.8 532 32.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.5e-70 270.4 468 36.5
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 4.2e-70 269.6 480 36.2
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 4.2e-70 269.6 486 35.2
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.2e-69 268.1 475 35.6
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 1.2e-69 268.1 481 34.9
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.6e-69 267.7 481 34.9
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.1e-69 267.3 467 36.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.7e-69 266.9 505 34.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 2.7e-69 266.9 504 35.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 4.6e-69 266.2 468 34.6
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 6.1e-69 265.8 470 34.9
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 7.9e-69 265.4 505 32.9
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 7.9e-69 265.4 505 33.3
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 7.9e-69 265.4 470 34.9
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.0e-68 265.0 375 40.5
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.3e-68 264.6 485 34.8
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.3e-68 264.6 479 34.4
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.3e-68 264.6 509 33.6
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.8e-68 264.2 537 32.6
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 3.0e-68 263.5 478 34.1
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.0e-68 263.5 471 34.6
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 3.9e-68 263.1 537 32.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 3.9e-68 263.1 466 35.0
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 8.7e-68 261.9 467 35.3
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.5e-67 261.2 479 34.7
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.5e-67 261.2 446 38.6
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.5e-67 260.4 501 33.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 3.3e-67 260.0 456 35.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 3.3e-67 260.0 466 34.3
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 4.3e-67 259.6 471 35.7
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 4.3e-67 259.6 542 33.0
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.7e-67 259.2 466 34.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.3e-66 258.1 534 32.6
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.3e-66 258.1 503 32.6
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.6e-66 257.7 511 32.9
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.8e-66 256.9 524 32.6
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 6.3e-66 255.8 467 34.9
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 8.2e-66 255.4 469 35.8
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 8.2e-66 255.4 471 33.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.1e-65 255.0 467 35.8
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.4e-65 253.8 463 34.8
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 5.3e-65 252.7 513 33.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 9.0e-65 251.9 455 35.4
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.0e-64 250.8 455 35.6
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 3.4e-64 250.0 454 35.2
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 3.4e-64 250.0 452 34.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 7.7e-64 248.8 452 35.6
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.7e-63 247.7 301 50.8
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.9e-63 246.9 465 33.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 3.8e-63 246.5 509 33.6
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.1e-62 245.0 467 33.8
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.9e-62 244.2 530 30.9
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.5e-62 243.8 469 34.5
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.2e-62 243.4 488 33.8
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 7.2e-62 242.3 487 33.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.7e-61 240.4 341 39.3
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.9e-60 236.5 341 38.7
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 6.7e-60 235.7 305 42.0
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.0e-59 234.2 389 36.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 3.3e-59 233.4 349 37.8
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 7.4e-59 232.3 296 43.2
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.4e-57 227.3 481 32.2
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.2e-56 224.9 329 38.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 2.0e-56 224.2 521 32.4
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.0e-55 221.9 475 32.8
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.9e-55 220.3 526 31.4
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.8e-55 219.9 380 36.1
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.8e-55 219.9 380 36.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 7.9e-53 212.2 468 31.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 6.7e-52 209.1 459 30.9
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.0e-51 207.6 438 31.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 2.0e-51 207.6 285 41.1
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.7e-51 205.3 316 37.0
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 8.2e-50 202.2 229 45.9
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 8.2e-50 202.2 402 33.6
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.2e-47 194.1 520 29.6
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-47 194.1 451 33.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-46 191.8 382 33.5
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.7e-45 187.2 382 33.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 8.0e-45 185.7 380 33.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.0e-44 183.3 332 35.5
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 2.6e-43 180.6 379 32.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 3.3e-43 180.3 470 30.4
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.6e-40 170.6 257 38.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 2.2e-39 167.5 333 34.5
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 5.5e-38 162.9 241 38.6
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.2e-36 156.4 241 38.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.4e-35 153.7 128 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 3.5e-32 143.7 464 25.6
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.3e-31 141.7 143 49.7
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.3e-26 125.2 113 50.4
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.9e-18 96.7 106 43.4
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.4e-18 96.3 134 41.8
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.2e-16 92.0 125 41.6
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 3.5e-16 90.5 83 50.6
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.4e-09 68.6 60 51.7
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.0e-09 66.2 87 39.1
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.0e-08 64.7 69 44.9
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.5e-08 63.9 113 29.2
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.5e-08 63.9 64 48.4
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.7e-07 61.6 70 42.9


User provided reference genes

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