Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.8e-76 287.3 156 100.0
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.2e-37 157.5 74 98.6
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-36 157.1 75 97.3
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-35 153.3 74 97.3
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-34 150.6 74 94.6
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-26 124.0 59 96.6
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.9e-26 122.5 89 69.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.8e-26 122.1 88 70.5
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.5e-26 121.3 89 68.5
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.9e-25 119.8 59 94.9
AUR62023968 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.8e-18 95.5 82 64.6
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 5.5e-17 91.7 58 72.4
AUR62035772 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.5e-17 91.7 74 67.6
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 1.2e-16 90.5 68 61.8
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.7e-16 89.4 70 60.0
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 2.7e-16 89.4 70 60.0
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.7e-16 89.4 65 61.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 8.0e-16 87.8 66 62.1
AUR62042635 Chenopodium quinoa HOM05D018884 ORTHO05D000002 1.0e-15 87.4 38 100.0
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.8e-15 86.7 65 60.0
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.8e-15 86.7 67 58.2
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.8e-15 86.7 65 61.5
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.3e-15 86.3 82 52.4
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.2e-15 85.1 58 60.3
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 5.2e-15 85.1 65 63.1
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.7e-15 84.7 66 60.6
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 6.7e-15 84.7 66 54.5
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.1e-14 84.0 67 53.7
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-14 83.6 65 56.9
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-14 83.6 65 56.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.5e-14 83.6 65 60.0
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.5e-14 83.6 65 55.4
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.0e-14 83.2 67 56.7
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.0e-14 83.2 67 55.2
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 2.0e-14 83.2 65 56.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.6e-14 82.8 71 54.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 3.3e-14 82.4 65 55.4
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 3.3e-14 82.4 65 55.4
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 4.4e-14 82.0 66 56.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 4.4e-14 82.0 65 55.4
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 4.4e-14 82.0 67 55.2
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 4.4e-14 82.0 65 60.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 5.7e-14 81.6 66 56.1
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 5.7e-14 81.6 65 55.4
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.7e-14 81.6 65 55.4
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 9.7e-14 80.9 68 52.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.7e-14 80.9 67 53.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 9.7e-14 80.9 58 60.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.3e-13 80.5 67 52.2
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-13 80.5 67 52.2
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-13 80.5 67 52.2
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-13 80.5 67 52.2
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.3e-13 80.5 67 53.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.3e-13 80.5 58 58.6
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.3e-13 80.5 58 58.6
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.7e-13 80.1 65 55.4
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.7e-13 80.1 65 53.8
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.7e-13 80.1 67 52.2
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.2e-13 79.7 67 55.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.2e-13 79.7 67 52.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.2e-13 79.7 67 52.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.2e-13 79.7 67 52.2
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 2.2e-13 79.7 65 53.8
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.8e-13 79.3 65 50.8
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 3.7e-13 79.0 65 49.2
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 3.7e-13 79.0 60 56.7
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.7e-13 79.0 65 49.2
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 4.8e-13 78.6 68 52.9
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 4.8e-13 78.6 68 52.9
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 4.8e-13 78.6 65 53.8
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 4.8e-13 78.6 65 53.8
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 4.8e-13 78.6 67 47.8
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 4.8e-13 78.6 60 55.0
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 4.8e-13 78.6 65 53.8
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 6.3e-13 78.2 67 47.8
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 6.3e-13 78.2 60 53.3
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 8.2e-13 77.8 67 49.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 8.2e-13 77.8 72 51.4
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.2e-13 77.8 54 64.8
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.1e-12 77.4 58 55.2
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.1e-12 77.4 65 53.8
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.1e-12 77.4 65 52.3
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.4e-12 77.0 68 52.9
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.4e-12 77.0 67 50.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.8e-12 76.6 67 50.7
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.8e-12 76.6 64 54.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-12 76.6 64 50.0
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.4e-12 76.3 58 55.2
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 2.4e-12 76.3 68 51.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 3.1e-12 75.9 68 51.5
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 3.1e-12 75.9 66 50.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.1e-12 75.9 67 47.8
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.1e-12 75.9 62 53.2
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 4.1e-12 75.5 62 61.3
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 4.1e-12 75.5 67 52.2
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 4.1e-12 75.5 54 64.8
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 5.3e-12 75.1 68 51.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 5.3e-12 75.1 68 51.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 5.3e-12 75.1 68 51.5
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 5.3e-12 75.1 68 51.5
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 5.3e-12 75.1 68 51.5
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.3e-12 75.1 40 90.0
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 5.3e-12 75.1 67 46.3
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 7.0e-12 74.7 68 51.5
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.0e-12 74.7 66 54.5
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 7.0e-12 74.7 64 48.4
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 9.1e-12 74.3 68 51.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 9.1e-12 74.3 65 55.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.1e-12 74.3 58 58.6
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.2e-11 73.9 68 50.0
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.0e-11 73.2 65 49.2
AUR62034401 Chenopodium quinoa HOM05D000532 ORTHO05D002414 2.6e-11 72.8 40 87.5
AUR62040357 Chenopodium quinoa HOM05D001314 ORTHO05D008265 2.6e-11 72.8 40 87.5
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 2.6e-11 72.8 89 42.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 3.5e-11 72.4 65 53.8
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 4.5e-11 72.0 56 53.6
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 4.5e-11 72.0 56 53.6
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.5e-11 72.0 65 50.8
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 5.9e-11 71.6 74 48.6
AUR62026085 Chenopodium quinoa HOM05D000573 ORTHO05D000425 7.7e-11 71.2 39 87.2
AUR62034371 Chenopodium quinoa HOM05D002023 ORTHO05D002049 7.7e-11 71.2 39 87.2
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 7.7e-11 71.2 65 50.8
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 7.7e-11 71.2 65 53.8
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.0e-10 70.9 65 53.8
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.0e-10 70.9 60 51.7
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.3e-10 70.5 78 46.2
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.7e-10 70.1 83 45.8
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.2e-10 69.7 65 55.4
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.2e-10 69.7 65 50.8
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 5.0e-10 68.6 51 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 8.5e-10 67.8 66 51.5
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.1e-09 67.4 65 49.2
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.9e-09 66.6 65 49.2
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 2.5e-09 66.2 73 46.6
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 5.5e-09 65.1 65 47.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 7.2e-09 64.7 65 47.7
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.1e-08 63.2 47 72.3
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.7e-08 62.8 47 72.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 8.0e-08 61.2 84 44.0
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.4e-07 60.5 103 35.0
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.0e-07 59.3 85 40.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.5e-06 57.0 85 38.8
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 7.5e-06 54.7 60 43.3


User provided reference genes

Program Settings