Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.6e-165 583.9 292 100.0
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 8.8e-117 424.1 232 90.9
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 8.8e-93 344.4 232 74.1
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.8e-91 339.3 232 75.0
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 6.1e-86 321.6 233 67.4
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.0e-85 320.9 236 68.6
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.4e-85 320.5 232 68.5
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.0e-85 319.3 244 65.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 6.8e-85 318.2 231 68.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 8.8e-85 317.8 229 68.6
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.6e-84 316.2 231 68.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.4e-84 315.8 231 67.1
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.3e-83 313.9 231 66.2
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.2e-83 313.2 231 67.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 3.7e-83 312.4 232 65.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 6.3e-83 311.6 233 66.5
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 6.3e-83 311.6 229 67.2
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.8e-82 310.1 241 64.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 3.1e-82 309.3 237 66.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.1e-82 308.9 232 67.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 5.4e-82 308.5 232 65.5
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 7.0e-82 308.1 234 66.7
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-81 307.0 232 64.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.0e-81 306.6 234 66.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.5e-81 305.8 236 66.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 4.5e-81 305.4 238 66.8
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.7e-81 304.7 246 63.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.7e-81 304.7 238 64.3
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.7e-81 304.7 238 64.3
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.7e-81 304.7 232 64.2
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.7e-81 304.7 235 65.5
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.0e-80 304.3 232 65.9
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.0e-80 304.3 232 63.8
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-80 303.9 246 63.0
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.3e-80 303.9 232 64.2
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.7e-80 303.5 232 63.8
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.7e-80 303.5 237 65.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.3e-80 303.1 232 63.4
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.3e-80 303.1 231 63.2
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.9e-80 302.8 232 65.9
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.9e-80 302.8 232 65.9
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.9e-80 302.8 232 65.1
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.9e-80 302.8 231 66.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.8e-80 302.4 233 64.4
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 3.8e-80 302.4 233 66.1
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.8e-80 302.4 235 63.8
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.8e-80 302.4 237 65.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 5.0e-80 302.0 234 62.8
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.6e-80 301.2 232 63.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 8.6e-80 301.2 233 63.5
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.5e-79 300.4 237 64.6
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.5e-79 299.7 236 61.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.3e-79 299.3 267 58.1
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.3e-79 298.9 234 63.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 5.6e-79 298.5 232 65.5
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 7.3e-79 298.1 239 63.2
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.3e-79 298.1 239 64.4
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.2e-78 297.4 238 63.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.6e-78 297.0 232 61.2
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.6e-78 297.0 231 64.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.6e-78 297.0 233 63.9
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.6e-78 297.0 229 63.8
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 3.6e-78 295.8 229 66.4
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 4.7e-78 295.4 237 64.6
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 8.0e-78 294.7 231 61.9
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 8.0e-78 294.7 237 62.9
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 8.0e-78 294.7 247 62.8
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.4e-77 293.9 232 63.4
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.3e-77 293.1 246 60.2
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.3e-77 293.1 237 62.0
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 3.0e-77 292.7 238 62.6
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 4.0e-77 292.4 236 62.3
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 5.2e-77 292.0 239 63.6
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 8.9e-77 291.2 251 59.4
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.5e-76 290.4 231 61.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.6e-76 289.7 232 65.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.4e-76 289.3 236 64.0
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 4.4e-76 288.9 238 60.9
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 5.7e-76 288.5 232 62.1
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.5e-76 288.1 235 59.6
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 9.8e-76 287.7 232 61.2
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.3e-75 287.3 240 61.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 4.9e-75 285.4 237 60.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.4e-74 283.9 232 61.6
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.4e-74 283.9 236 61.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.2e-74 282.7 293 51.5
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 9.2e-74 281.2 228 62.7
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 9.2e-74 281.2 229 62.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.0e-73 280.0 239 61.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.0e-72 275.4 233 59.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 8.6e-72 274.6 239 59.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.3e-71 271.6 225 62.7
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 9.5e-71 271.2 237 60.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 2.1e-70 270.0 237 59.9
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 3.6e-70 269.2 237 59.1
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.6e-70 269.2 237 59.9
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 8.0e-70 268.1 232 59.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.0e-69 265.8 215 62.8
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.7e-67 260.4 249 57.0
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-64 250.8 176 67.0
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-61 238.8 153 71.9
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 7.5e-60 235.0 228 53.9
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 8.3e-59 231.5 189 64.6
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-58 229.6 156 69.2
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.6e-57 227.3 244 50.4
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-57 226.5 159 68.6
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 3.5e-57 226.1 161 67.7
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 7.8e-57 224.9 190 60.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.4e-53 214.2 159 64.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-53 214.2 158 65.2
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 9.9e-52 208.0 251 44.6
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.9e-50 203.8 142 66.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-48 196.8 164 60.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.3e-47 193.0 230 48.7
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 8.1e-46 188.3 221 48.9
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.2e-42 176.0 114 76.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.0e-32 144.8 101 66.3
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.3e-32 144.4 106 62.3
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.5e-28 131.0 235 39.6
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 5.8e-28 129.0 176 45.5
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.2e-27 127.1 231 38.5
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 7.9e-25 118.6 235 36.2
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-21 108.2 83 60.2
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-21 108.2 89 59.6
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-12 78.2 54 66.7
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-12 77.4 75 50.7
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 5.5e-10 69.3 85 50.6
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-08 65.1 52 59.6
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-08 65.1 52 59.6
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 8.2e-06 55.5 46 47.8


User provided reference genes

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