Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 7.7e-48 193.4 89 100.0
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 9.4e-46 186.4 89 94.4
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 3.5e-32 141.4 84 79.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 7.5e-19 97.1 76 64.5
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.7e-18 95.9 73 61.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 4.5e-16 87.8 71 53.5
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.0e-15 86.7 76 59.2
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 6.6e-15 84.0 82 54.9
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-14 83.2 76 56.6
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 5.5e-14 80.9 88 48.9
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.6e-13 79.3 82 50.0
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.6e-13 79.3 76 53.9
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 8.0e-13 77.0 87 44.8
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.2e-12 74.3 78 44.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 6.8e-12 73.9 82 48.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 6.8e-12 73.9 79 50.6
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.9e-12 73.6 78 51.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 8.9e-12 73.6 76 50.0
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 8.9e-12 73.6 67 50.7
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 8.9e-12 73.6 54 55.6
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.5e-11 72.8 78 50.0
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.4e-11 71.6 78 50.0
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 3.4e-11 71.6 46 63.0
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.3e-10 69.7 79 44.3
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 1.7e-10 69.3 53 54.7
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.7e-10 69.3 79 46.8
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.7e-10 69.3 79 44.3
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.7e-10 69.3 79 44.3
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.7e-10 69.3 79 43.0
EL10Ac1g00116 Beta vulgaris HOM05D000090 ORTHO05D001584 2.2e-10 68.9 74 50.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.2e-10 68.9 85 43.5
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.8e-10 68.6 46 58.7
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 3.7e-10 68.2 82 47.6
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 4.9e-10 67.8 78 48.7
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.9e-10 67.8 72 48.6
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.9e-10 67.8 72 48.6
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 8.3e-10 67.0 45 60.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 1.1e-09 66.6 83 44.6
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.1e-09 66.6 80 40.0
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-09 66.2 45 53.3
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-09 66.2 45 55.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.8e-09 65.9 77 44.2
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.8e-09 65.9 43 65.1
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.8e-09 65.9 79 44.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-09 65.9 79 44.3
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 2.4e-09 65.5 41 56.1
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.1e-09 65.1 78 43.6
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 4.1e-09 64.7 78 43.6
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 5.4e-09 64.3 76 42.1
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 5.4e-09 64.3 76 42.1
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 5.4e-09 64.3 77 44.2
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 7.0e-09 63.9 85 41.2
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 7.0e-09 63.9 74 43.2
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 9.2e-09 63.5 72 45.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 9.2e-09 63.5 85 40.0
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 9.2e-09 63.5 80 41.2
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.2e-08 63.2 82 39.0
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.2e-08 63.2 82 39.0
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 1.2e-08 63.2 80 45.0
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.6e-08 62.8 49 57.1
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.6e-08 62.8 85 41.2
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.6e-08 62.8 82 42.7
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.0e-08 62.4 47 55.3
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 2.0e-08 62.4 41 61.0
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.7e-08 62.0 75 45.3
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 3.5e-08 61.6 77 41.6
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 5.9e-08 60.8 49 55.1
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 5.9e-08 60.8 49 55.1
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 5.9e-08 60.8 49 55.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 5.9e-08 60.8 75 44.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.3e-07 59.7 43 60.5
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.3e-07 59.7 43 60.5
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.7e-07 59.3 49 49.0
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 1.7e-07 59.3 74 45.9
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.9e-07 58.5 83 41.0
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 2.9e-07 58.5 46 56.5
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.9e-07 58.5 52 50.0
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.9e-07 58.2 41 58.5
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.9e-07 58.2 79 43.0
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.9e-07 58.2 81 42.0
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 5.0e-07 57.8 44 52.3
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 5.0e-07 57.8 52 48.1
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 1.5e-06 56.2 44 54.5
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.9e-06 55.8 80 38.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.9e-06 55.8 80 38.8
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.9e-06 55.8 76 38.2
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 2.5e-06 55.5 42 54.8
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.5e-06 55.5 49 46.9
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 2.5e-06 55.5 81 42.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.3e-06 55.1 49 46.9
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 4.3e-06 54.7 76 40.8
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 4.3e-06 54.7 82 37.8
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 5.6e-06 54.3 82 37.8
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 5.6e-06 54.3 45 51.1


User provided reference genes

Program Settings