Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 0.0e+00 1329.3 776 100.0
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 0.0e+00 1268.4 776 95.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 6.7e-281 970.7 784 73.9
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 2.0e-261 906.0 778 69.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 4.5e-245 851.7 779 68.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.3e-212 743.0 787 59.6
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.2e-205 720.7 789 56.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.2e-202 710.7 791 60.2
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.4e-201 707.2 779 58.8
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.3e-201 706.4 780 56.5
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.2e-200 704.1 780 56.3
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.8e-199 699.1 693 59.6
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 4.9e-199 698.7 781 57.9
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.3e-196 690.6 694 58.9
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.7e-196 690.3 778 57.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 5.1e-196 688.7 780 55.9
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.2e-194 684.1 711 62.0
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.6e-194 683.7 786 55.7
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 5.2e-193 678.7 785 54.8
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.9e-191 672.9 791 55.5
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.3e-188 663.3 799 55.8
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 7.3e-187 658.3 793 52.7
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.0e-185 651.4 778 59.3
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 9.9e-184 647.9 794 53.3
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.8e-183 646.0 714 57.8
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 4.9e-183 645.6 793 53.0
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 8.4e-183 644.8 817 51.5
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 2.1e-181 640.2 774 55.9
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.0e-180 637.9 794 53.8
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 4.8e-178 629.0 697 58.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.0e-176 623.6 802 53.0
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.6e-176 621.7 932 46.6
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 2.2e-175 620.2 796 51.6
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.9e-175 619.0 787 54.5
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-174 617.5 781 52.0
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.9e-174 617.1 825 51.4
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 2.4e-174 616.7 787 54.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.2e-174 615.9 784 52.0
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.2e-173 614.4 697 54.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.6e-173 614.0 697 54.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 2.1e-173 613.6 790 51.1
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.5e-171 606.7 781 52.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 5.6e-171 605.5 704 55.3
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 8.2e-170 601.7 699 55.4
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.8e-169 600.5 794 49.7
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 4.0e-169 599.4 789 51.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-168 597.8 781 51.1
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.6e-168 596.7 781 50.8
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 3.4e-168 596.3 709 55.3
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.3e-167 594.3 782 50.4
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 8.4e-167 591.7 785 51.2
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.4e-166 590.9 784 50.6
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.4e-166 590.9 694 53.9
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.2e-166 589.7 809 52.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-165 587.8 778 52.6
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.6e-165 587.4 784 50.4
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.6e-165 585.9 809 50.1
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 6.0e-165 585.5 790 49.1
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.7e-163 578.9 793 48.9
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.4e-163 578.6 788 50.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.7e-163 578.2 792 49.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 6.3e-162 575.5 711 51.5
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.4e-161 573.5 807 48.5
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 3.1e-161 573.2 822 50.5
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 9.0e-161 571.6 711 53.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.2e-160 571.2 779 54.8
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.0e-160 570.5 785 49.7
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 7.6e-160 568.5 806 47.8
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 4.2e-158 562.8 788 48.4
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 5.1e-156 555.8 695 52.7
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 8.7e-156 555.1 819 46.6
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.1e-155 554.7 781 48.5
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.7e-155 551.6 779 49.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 9.7e-155 551.6 708 51.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.3e-154 551.2 703 53.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 1.8e-153 547.4 801 49.2
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 4.5e-152 542.7 806 47.3
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.8e-148 530.8 776 50.4
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.0e-148 530.0 795 48.9
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.1e-147 528.1 795 48.2
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.7e-147 525.8 798 48.9
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 5.7e-147 525.8 800 48.5
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.3e-145 519.2 779 46.9
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 5.3e-145 519.2 802 45.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.2e-144 518.1 609 56.2
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 5.9e-144 515.8 862 44.9
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.0e-143 515.0 609 55.8
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.6e-141 507.7 710 48.3
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 5.2e-140 502.7 792 48.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.5e-139 501.1 817 44.8
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.6e-139 500.4 710 47.3
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.3e-138 495.7 619 53.8
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 9.1e-137 491.9 712 48.9
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.3e-135 488.0 640 51.2
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.7e-135 487.6 796 46.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.2e-135 487.3 808 44.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-135 486.9 710 47.9
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.8e-135 486.5 710 48.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 6.5e-135 485.7 710 48.0
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 6.5e-135 485.7 712 48.3
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 8.5e-135 485.3 711 48.2
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 5.5e-134 482.6 703 46.7
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-133 481.1 699 46.2
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.7e-133 479.6 702 48.1
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 6.1e-133 479.2 710 48.7
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 8.0e-133 478.8 695 49.1
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 4.0e-132 476.5 717 47.4
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 8.8e-132 475.3 706 46.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.6e-131 473.8 800 45.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.3e-131 473.4 704 47.2
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.7e-130 471.1 716 45.5
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 6.3e-130 469.2 790 47.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.8e-129 467.6 712 45.1
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.9e-128 462.6 719 46.5
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 6.5e-127 459.1 694 48.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.9e-126 457.6 753 44.2
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.5e-126 457.2 699 44.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 1.3e-122 444.9 533 53.1
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.8e-121 441.0 702 45.7
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-120 438.0 711 45.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.7e-119 434.5 712 43.8
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 2.3e-119 434.1 771 41.9
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 2.8e-117 427.2 695 44.5
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 3.0e-116 423.7 705 46.0
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 6.8e-116 422.5 711 45.3
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 6.8e-116 422.5 511 51.9
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 8.9e-116 422.2 702 44.9
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-115 420.6 706 43.8
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 4.4e-115 419.9 843 41.8
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.4e-113 414.8 707 44.4
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 5.9e-112 409.5 702 42.9
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 6.2e-101 372.9 601 43.8
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 3.9e-95 353.6 740 38.6
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.9e-95 353.6 328 61.9
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-94 351.3 718 40.4
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 5.6e-94 349.7 394 53.3
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 5.6e-94 349.7 298 65.8
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.9e-89 334.7 283 65.7
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 2.9e-74 284.3 350 54.0
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.9e-62 245.0 321 51.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 7.4e-62 243.0 258 57.8
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 7.4e-62 243.0 303 48.5
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 6.2e-61 240.0 394 43.4
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 9.0e-60 236.1 706 32.4
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.9e-56 223.0 401 41.1
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.3e-54 217.6 379 44.6
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 9.0e-52 209.5 324 41.0
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 6.7e-39 166.8 197 54.3
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-36 159.1 145 61.4
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.1e-30 139.4 183 52.5
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-29 135.2 138 54.3
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 7.0e-28 130.2 165 51.5
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 5.5e-25 120.6 105 68.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 2.3e-23 115.2 259 37.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.8e-21 107.5 192 40.6
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.1e-20 104.8 115 49.6
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.2e-19 102.8 378 28.8
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.9e-17 95.5 285 29.8
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.1e-16 90.5 62 79.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.1e-16 90.5 108 53.7
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 2.3e-15 88.6 80 57.5
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.2e-15 87.4 86 61.6
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 4.5e-11 74.3 63 66.7
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 5.9e-11 73.9 203 31.0
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 7.7e-11 73.6 282 30.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-09 69.7 65 61.5
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.6e-08 65.9 79 51.9
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.4e-07 62.8 74 52.7


User provided reference genes

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