Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.1e-139 500.0 259 100.0
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 7.5e-136 487.3 259 97.3
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 4.6e-117 424.9 304 74.3
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 3.7e-111 405.2 259 81.1
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.3e-105 386.0 263 75.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 7.3e-99 364.4 265 72.1
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 3.6e-98 362.1 261 72.0
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 8.1e-98 360.9 264 70.1
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.4e-97 359.4 265 69.1
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.2e-96 357.1 265 69.4
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.0e-96 356.3 264 68.6
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 5.8e-96 354.8 267 68.5
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 9.9e-96 354.0 263 69.2
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.7e-95 353.2 263 70.3
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 3.8e-95 352.1 267 69.7
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 4.9e-95 351.7 262 69.8
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.1e-94 350.5 262 69.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.4e-94 350.1 268 69.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.4e-94 350.1 269 66.9
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 3.2e-94 349.0 267 70.8
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 3.2e-94 349.0 270 68.1
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 4.2e-94 348.6 262 69.1
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 5.4e-94 348.2 263 69.2
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 7.1e-94 347.8 261 69.7
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 7.1e-94 347.8 261 68.2
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 9.2e-94 347.4 271 69.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.2e-93 347.1 269 68.0
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.2e-93 347.1 266 68.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.1e-93 346.3 259 68.3
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.7e-93 345.9 261 67.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 6.0e-93 344.7 263 67.7
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 6.0e-93 344.7 261 69.3
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.8e-93 344.4 263 68.1
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 7.8e-93 344.4 263 67.7
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.0e-92 344.0 262 67.9
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.3e-92 343.6 266 65.8
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-92 343.6 264 65.9
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 2.3e-92 342.8 262 66.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 3.9e-92 342.0 258 70.5
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.9e-92 342.0 269 66.5
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 5.1e-92 341.7 262 65.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 6.6e-92 341.3 258 68.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.6e-92 341.3 264 65.9
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 8.7e-92 340.9 263 67.3
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.1e-91 340.5 261 65.5
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.1e-91 340.5 271 65.3
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.5e-91 340.1 268 65.7
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.5e-91 339.3 264 68.6
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 5.6e-91 338.2 261 66.3
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 7.3e-91 337.8 262 66.8
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 4.7e-90 335.1 266 67.3
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 6.2e-90 334.7 263 65.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 6.2e-90 334.7 262 68.3
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 6.2e-90 334.7 266 66.9
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 8.1e-90 334.3 266 66.2
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.1e-89 334.0 266 66.2
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.1e-89 334.0 266 66.2
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.1e-89 334.0 261 65.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.4e-89 333.6 269 63.6
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.4e-89 332.8 264 68.2
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.1e-89 332.4 261 69.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.1e-89 332.4 261 69.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.1e-89 332.4 261 69.0
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.1e-89 332.4 216 73.6
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.1e-89 332.4 265 65.7
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.0e-89 332.0 256 66.0
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 6.9e-89 331.3 261 67.8
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 9.0e-89 330.9 261 67.0
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 9.0e-89 330.9 261 68.6
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.5e-88 330.1 259 66.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.5e-88 330.1 261 64.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.0e-88 329.7 259 66.8
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.0e-88 329.7 259 66.8
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 2.0e-88 329.7 259 67.6
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 2.0e-88 329.7 266 65.4
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.4e-88 328.9 262 64.9
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 4.4e-88 328.6 261 67.8
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 5.8e-88 328.2 265 64.2
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 5.8e-88 328.2 266 64.7
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.6e-88 327.8 261 67.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.6e-88 327.8 261 67.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.7e-87 326.6 261 64.0
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.9e-87 325.9 267 64.8
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 6.4e-87 324.7 264 66.7
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.4e-86 322.8 258 66.3
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.2e-86 322.4 249 66.7
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.4e-86 321.6 268 64.6
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 5.4e-86 321.6 234 70.5
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 9.3e-86 320.9 274 64.2
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.6e-85 318.5 262 64.1
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 6.0e-85 318.2 262 64.1
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.3e-84 316.2 226 71.2
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.5e-83 313.5 250 68.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.3e-83 312.0 250 67.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.4e-81 307.0 250 66.0
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.4e-81 307.0 250 66.0
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 9.0e-81 304.3 234 65.4
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.5e-80 303.5 242 65.3
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 4.9e-79 298.5 216 66.7
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.6e-77 293.5 214 65.4
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 6.7e-76 288.1 180 77.8
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 7.4e-75 284.6 191 70.2
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.8e-74 282.0 260 59.6
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 3.2e-70 269.2 264 56.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.9e-68 262.3 230 61.7
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 5.1e-68 261.9 222 59.5
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 8.7e-68 261.2 263 54.0
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.6e-66 256.9 203 59.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 8.2e-66 254.6 224 54.5
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 3.1e-65 252.7 260 54.6
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 3.2e-62 242.7 197 64.5
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 3.2e-62 242.7 197 64.5
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.2e-62 242.7 192 67.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.9e-59 233.4 179 60.9
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.8e-55 219.2 177 68.9
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.0e-52 211.1 138 69.6
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 2.2e-50 203.4 133 76.7
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 7.4e-43 178.3 154 53.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.5e-40 169.5 165 48.5
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.4e-38 164.1 114 72.8
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 4.7e-37 159.1 263 43.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 4.7e-37 159.1 263 43.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.4e-36 157.5 263 42.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.7e-35 152.1 162 55.6
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 9.1e-33 144.8 112 65.2
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.2e-26 123.6 179 36.9
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 4.8e-26 122.5 80 80.0
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.0e-23 112.5 68 79.4
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.5e-19 98.6 70 65.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-18 97.4 81 61.7
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.1e-14 84.7 169 29.6
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.3e-14 83.2 59 66.1
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.3e-10 71.2 60 58.3
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-09 66.6 39 79.5
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.4e-09 65.9 90 47.8
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 5.0e-07 59.3 52 63.5
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.5e-06 57.0 56 50.0


User provided reference genes

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