Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 2192.2 1100 100.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1756.1 1162 78.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1698.7 1162 75.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1576.2 1156 70.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1572.0 1160 70.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1561.6 1168 69.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1560.4 1163 69.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1553.1 1163 69.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1552.3 1161 69.9
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1552.3 1159 68.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1549.3 1161 69.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1163 69.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1547.7 1164 69.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1546.9 1168 69.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1546.2 1162 69.0
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1541.2 1164 68.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1540.0 1165 68.9
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1539.2 1162 69.0
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1538.1 1163 68.3
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1160 69.1
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1535.8 1162 68.5
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1535.8 1161 69.1
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1535.4 1159 68.2
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1535.0 1157 68.5
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1531.9 1163 69.0
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1531.5 1164 68.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1164 68.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1161 68.9
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1530.0 1160 68.1
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1528.8 1160 68.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1526.1 1165 68.8
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1525.4 1167 68.5
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1522.3 1160 68.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1522.3 1166 68.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1521.1 1166 68.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1521.1 1162 67.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1520.8 1164 67.7
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1519.6 1134 69.1
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1519.6 1160 67.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1519.2 1164 68.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1518.4 1162 68.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1517.3 1094 71.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1516.9 1208 66.3
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1516.9 1168 67.9
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1516.5 1163 67.4
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1516.5 1190 66.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1515.4 1162 67.6
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1512.3 1165 67.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1511.9 1156 68.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1511.9 1162 68.3
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1510.4 1166 68.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1506.9 1161 67.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1501.9 1177 67.4
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1500.3 1162 68.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1498.4 1180 67.1
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1492.6 1159 67.3
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1488.0 1161 67.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1487.2 1160 66.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1480.7 1159 67.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1479.9 1162 66.3
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1465.7 1210 64.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1461.4 1202 65.2
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1456.8 1235 63.5
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1455.7 1271 62.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1454.1 1155 66.1
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1452.6 1156 66.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1446.0 1110 67.9
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1445.6 1154 65.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1445.6 1098 68.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1432.2 1155 65.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1430.6 1154 65.3
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1421.4 1338 59.3
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1410.6 1155 64.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1408.7 1055 69.1
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1407.1 1202 63.1
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1404.4 1155 63.9
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1395.6 1155 63.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1393.6 1155 63.5
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1393.3 1158 63.7
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1393.3 1158 63.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1384.4 1182 62.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1380.2 1162 62.6
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1376.7 1156 63.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1373.2 1158 63.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1372.1 1158 63.1
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1371.3 1185 63.7
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1369.4 1159 63.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1305.4 1164 59.8
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1301.6 1157 59.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1299.6 1194 59.0
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1298.1 1156 59.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1297.3 1155 60.7
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1271.1 908 72.5
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1268.4 990 68.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1196.4 1144 58.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1162.1 858 70.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1156.0 851 69.9
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1147.5 738 80.4
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1135.6 1017 61.7
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1116.7 894 65.8
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1110.9 1124 55.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.3e-298 1030.0 728 70.9
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.1e-296 1022.7 814 63.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 2.3e-271 939.5 1174 44.8
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.9e-268 929.9 1518 39.9
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 7.8e-259 897.9 722 66.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.2e-256 890.6 670 65.5
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.2e-254 884.0 1155 44.5
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.9e-247 857.8 1187 43.6
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.4e-236 822.0 1182 41.9
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 9.0e-215 751.5 1422 34.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.2e-204 715.3 670 57.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.1e-199 699.9 451 74.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.2e-179 634.8 590 54.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.1e-179 632.5 561 63.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.0e-177 627.5 603 59.0
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.4e-177 626.7 421 70.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.8e-167 594.3 394 82.2
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.1e-143 513.5 532 53.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.9e-140 504.6 451 59.2
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.4e-136 489.6 472 59.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.2e-131 475.3 307 76.5
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.3e-109 401.4 368 63.0
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.3e-76 291.2 194 73.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.3e-74 283.9 269 61.3
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 8.5e-72 276.6 1230 24.1
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.1e-71 276.2 206 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.2e-61 240.7 317 41.6
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.5e-60 239.2 198 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.0e-60 238.8 346 43.4
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.4e-60 238.0 294 50.0
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.4e-58 232.6 178 61.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.0e-56 226.5 789 26.7
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.4e-52 211.5 534 32.2
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.3e-51 207.2 212 53.8
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 3.8e-48 198.0 1041 21.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.6e-46 191.4 251 41.8
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 3.0e-45 188.3 239 49.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.0e-45 188.3 239 49.8
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 5.0e-40 171.0 169 52.1
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.5e-39 168.7 134 64.9
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 3.9e-32 144.8 327 36.1
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.2e-30 139.8 128 61.7
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 3.4e-28 131.7 105 65.7
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.4e-27 127.5 85 65.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 2.1e-25 122.5 107 60.7
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.9e-24 118.2 105 62.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 6.8e-21 107.5 64 78.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.2e-19 102.4 74 66.2
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.4e-18 99.0 67 65.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.1e-18 98.2 60 80.0
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.2e-17 96.7 723 22.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 4.6e-17 94.7 161 37.9
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.7e-16 92.8 69 66.7
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.1e-16 91.3 138 42.8
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.6e-14 85.1 44 84.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.1e-13 83.6 66 60.6
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.4e-13 82.4 80 57.5
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 3.1e-13 82.0 95 46.3
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 9.0e-13 80.5 49 77.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 7.6e-12 77.4 58 67.2
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 4.2e-10 71.6 55 61.8
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.1e-09 69.3 44 72.7
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.0e-08 67.0 48 64.6
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-08 67.0 34 79.4


User provided reference genes

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