Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1848.9 919 100.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1717.6 948 91.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1431.4 988 75.3
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 993 58.4
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 1.1e-309 1066.6 963 57.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.0e-308 1062.4 983 58.2
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 2.0e-308 1062.4 1185 52.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 4.2e-306 1054.7 970 58.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 7.9e-305 1050.4 975 58.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 2.3e-304 1048.9 983 57.3
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 6.2e-302 1040.8 990 58.2
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 2.6e-300 1035.4 958 57.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 2.6e-300 1035.4 960 59.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 5.8e-300 1034.2 978 57.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 7.1e-298 1027.3 974 57.6
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 1.6e-297 1026.2 960 57.1
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 2.1e-297 1025.8 961 56.7
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.3e-296 1023.1 941 61.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.8e-296 1022.7 988 58.0
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.5e-295 1019.6 956 58.2
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 2.5e-295 1018.8 979 56.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.3e-295 1018.5 973 57.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 4.0e-293 1011.5 969 57.5
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.3e-293 1011.1 973 57.1
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 9.0e-293 1010.4 1009 55.2
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 7.6e-292 1007.3 965 57.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 7.6e-292 1007.3 947 57.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 2.9e-291 1005.4 1001 55.3
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.5e-291 1004.2 894 60.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 6.5e-291 1004.2 964 56.8
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 6.5e-291 1004.2 954 57.3
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 8.4e-291 1003.8 986 56.8
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 8.4e-291 1003.8 977 56.8
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.1e-290 1003.4 989 55.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 5.5e-290 1001.1 981 55.9
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 2.1e-289 999.2 940 56.6
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 1.0e-288 996.9 963 56.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 3.0e-288 995.3 966 56.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 3.9e-288 995.0 956 56.8
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 5.1e-288 994.6 986 55.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 6.7e-288 994.2 961 56.0
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 2.5e-287 992.3 963 56.2
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 2.5e-287 992.3 1004 54.4
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.6e-286 989.6 956 57.2
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 2.8e-286 988.8 968 56.3
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 1.1e-285 986.9 961 55.2
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.1e-285 985.3 969 56.1
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.4e-284 981.9 968 55.5
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 5.0e-283 978.0 961 55.8
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.1e-282 976.9 1023 54.0
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.1e-282 976.9 918 56.5
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.4e-282 976.5 947 56.1
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.2e-282 975.3 1023 53.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.2e-281 973.4 1023 53.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 1.6e-281 973.0 946 55.8
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 4.6e-281 971.5 1009 53.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 2.5e-279 965.7 969 55.4
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 3.3e-279 965.3 959 55.6
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 4.3e-279 964.9 969 55.2
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 4.8e-278 961.4 990 54.0
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 6.9e-277 957.6 959 54.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-276 956.8 959 54.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.2e-276 956.8 953 54.1
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.5e-276 956.4 982 53.7
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 7.7e-276 954.1 1046 52.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 2.2e-275 952.6 962 53.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 8.5e-275 950.7 960 54.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 8.5e-275 950.7 968 54.4
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.1e-274 950.3 961 54.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.4e-274 949.9 943 55.7
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 1.9e-274 949.5 957 54.5
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.9e-274 949.5 965 55.0
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 2.5e-274 949.1 1001 54.3
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 2.5e-274 949.1 1047 52.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 5.5e-274 948.0 956 54.1
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 5.5e-274 948.0 950 54.3
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.2e-273 946.8 962 54.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.2e-273 946.8 857 59.6
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 5.1e-272 941.4 949 54.5
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 5.1e-272 941.4 949 54.5
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 8.8e-272 940.6 994 54.3
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 1.5e-271 939.9 953 53.7
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.3e-270 936.8 1072 49.9
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.7e-270 936.4 973 53.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 6.3e-270 934.5 972 55.0
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.8e-269 932.9 982 52.5
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.4e-269 932.6 967 54.4
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-269 932.6 980 52.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 5.3e-269 931.4 949 54.7
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 6.9e-269 931.0 944 53.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.0e-268 929.5 955 53.6
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-268 929.5 970 54.5
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.5e-267 924.5 898 56.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.1e-266 923.7 969 52.3
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.2e-265 920.2 968 52.3
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.6e-265 919.8 1041 51.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.3e-264 916.0 1119 48.4
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 4.4e-263 911.8 953 52.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 4.4e-263 911.8 953 52.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.1e-261 905.6 974 52.6
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-261 905.2 991 51.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 4.5e-260 901.7 963 52.6
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.7e-259 899.8 911 55.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 2.2e-259 899.4 925 54.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.8e-259 898.7 896 55.0
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 8.8e-256 887.5 879 55.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.7e-255 884.8 975 51.3
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 7.5e-255 884.4 871 55.0
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 2.4e-253 879.4 960 52.3
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.7e-252 875.9 965 51.4
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.9e-251 872.5 812 56.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-250 870.2 1063 48.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 4.7e-225 785.4 893 50.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.9e-214 749.6 808 52.8
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.7e-212 743.0 938 45.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 7.1e-205 718.4 1109 41.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 7.8e-204 714.9 883 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.3e-203 714.1 938 43.9
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.6e-202 708.8 736 55.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.2e-199 701.0 771 49.8
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.0e-175 620.5 743 49.0
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.7e-155 552.4 672 50.6
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.1e-154 551.6 642 48.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.3e-153 545.8 426 65.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 3.1e-152 543.5 906 39.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 9.1e-152 542.0 675 48.7
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.7e-132 476.5 329 71.7
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.6e-130 470.7 310 74.2
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.6e-124 451.4 341 68.9
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.7e-124 449.9 724 41.6
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.3e-123 447.6 598 46.5
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.3e-123 447.6 304 72.0
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.2e-120 435.6 554 47.1
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-119 435.3 316 69.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.3e-117 426.8 308 66.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 8.0e-116 422.5 496 51.4
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.7e-100 370.2 488 46.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.4e-98 364.0 314 58.3
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 2.8e-84 317.8 242 66.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.6e-77 293.5 253 57.7
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.3e-52 210.3 139 71.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 9.0e-51 206.5 165 64.8
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-47 196.1 214 50.9
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.7e-41 175.6 129 68.2
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.5e-34 151.0 130 57.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.7e-31 141.7 163 47.9
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.0e-31 140.2 305 39.0
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.8e-28 131.7 106 60.4
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.1e-27 126.7 133 54.1
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-25 122.5 87 63.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.2e-16 91.7 160 36.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.6e-15 89.4 66 69.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 4.4e-13 81.3 291 27.1
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.8e-12 78.6 52 69.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.8e-12 77.8 58 63.8
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.1e-11 75.1 133 32.3
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 7.0e-11 73.9 58 67.2
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.7e-10 72.0 68 51.5
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 9.5e-08 63.5 146 33.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 9.5e-08 63.5 73 47.9
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.6e-07 62.8 53 54.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.6e-07 62.8 53 54.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 54.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.8e-07 62.0 33 78.8


User provided reference genes

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