Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 0.0e+00 1729.1 885 100.0
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 0.0e+00 1547.3 865 92.6
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1511.1 917 84.7
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 0.0e+00 1274.6 890 74.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 0.0e+00 1255.7 1010 66.9
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1102.0 919 63.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 6.0e-310 1067.4 914 61.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.0e-309 1066.6 924 61.9
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 3.0e-309 1065.1 911 62.0
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 3.0e-309 1065.1 922 60.1
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.2e-302 1043.1 924 60.1
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 7.8e-302 1040.4 917 60.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 1.0e-301 1040.0 916 60.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.7e-301 1039.3 917 59.4
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 1.1e-300 1036.6 850 63.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 5.6e-300 1034.2 921 59.7
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 1.2e-299 1033.1 917 60.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.6e-299 1032.7 917 59.8
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.6e-299 1031.6 931 59.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 5.3e-298 1027.7 996 56.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 1.2e-297 1026.5 924 57.9
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 2.0e-297 1025.8 921 58.7
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 4.2e-295 1018.1 921 58.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 9.3e-295 1016.9 931 58.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.7e-293 1012.7 917 58.9
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 2.3e-293 1012.3 912 57.6
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 3.9e-293 1011.5 924 57.6
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 6.6e-293 1010.7 907 59.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 6.6e-293 1010.7 919 58.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.5e-292 1009.6 914 57.8
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.5e-292 1009.6 932 57.7
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 3.3e-292 1008.4 917 57.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 4.3e-292 1008.1 923 58.1
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 5.6e-292 1007.7 926 58.2
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 9.6e-292 1006.9 915 58.8
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.8e-290 1002.7 915 58.4
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.2e-289 1000.0 958 55.9
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 5.8e-289 997.7 864 60.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 7.6e-289 997.3 906 58.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 6.4e-288 994.2 906 58.8
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 4.2e-287 991.5 962 54.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.7e-286 988.8 914 56.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 1.0e-285 986.9 929 57.5
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 6.2e-283 977.6 919 57.5
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 8.1e-283 977.2 919 56.7
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.1e-282 976.9 914 58.4
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.5e-281 973.0 921 57.2
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 3.8e-280 968.4 929 57.1
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 8.4e-280 967.2 938 57.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 2.5e-279 965.7 919 56.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 9.3e-279 963.8 919 56.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 4.6e-278 961.4 874 58.8
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.6e-278 961.4 1081 50.7
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 7.9e-278 960.7 924 56.2
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.9e-278 960.7 838 59.3
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 6.7e-277 957.6 916 56.0
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 5.6e-276 954.5 1081 51.0
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.3e-275 953.4 867 57.4
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 1.1e-274 950.3 912 54.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 3.1e-274 948.7 905 55.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 7.1e-271 937.6 914 54.4
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.5e-268 929.1 916 54.0
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 5.7e-268 927.9 941 54.0
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 1.3e-267 926.8 922 53.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 2.8e-267 925.6 916 53.4
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 4.8e-267 924.9 913 54.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.8e-266 922.9 920 54.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 5.3e-266 921.4 922 53.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 6.9e-266 921.0 920 53.6
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 2.6e-265 919.1 916 53.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 2.2e-264 916.0 922 52.9
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 3.6e-262 908.7 920 53.3
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.3e-261 906.0 910 55.3
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 2.3e-261 906.0 977 50.1
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.1e-260 903.7 914 53.7
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.5e-260 902.5 917 53.8
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 3.0e-253 879.0 766 60.1
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.0e-252 876.3 916 51.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.6e-252 875.9 907 54.7
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.5e-247 859.4 944 50.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.7e-243 846.7 918 52.1
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 6.3e-243 844.7 764 58.9
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.1e-242 842.4 916 49.8
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.8e-240 835.5 1141 44.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.1e-239 833.9 934 48.6
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 5.7e-236 821.6 712 62.1
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.5e-231 807.0 915 50.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.5e-231 805.1 773 54.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 9.4e-231 804.3 939 47.3
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 4.1e-226 788.9 718 57.1
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.6e-225 786.9 913 49.4
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.2e-223 778.9 728 57.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 3.0e-208 729.6 643 59.3
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.6e-206 723.8 636 61.6
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 8.6e-200 701.4 600 60.0
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 9.0e-173 611.7 571 55.3
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.4e-163 578.6 530 60.4
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 4.6e-161 572.8 567 54.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 4.5e-148 529.6 914 38.9
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 4.5e-148 529.6 488 58.0
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.2e-137 495.0 433 61.0
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.8e-136 491.1 425 61.2
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-131 474.9 514 50.8
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.2e-130 469.9 412 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 4.0e-128 463.4 903 35.3
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.7e-121 440.7 436 54.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.1e-117 427.2 903 33.2
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.1e-117 426.8 904 34.6
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.2e-111 408.7 905 33.6
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 4.1e-109 400.2 604 41.1
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-103 382.1 634 39.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.6e-87 327.8 297 59.6
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 4.1e-85 320.5 349 50.1
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-83 313.5 571 37.1
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.6e-81 307.4 674 34.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.2e-78 298.1 244 66.8
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.1e-64 251.1 277 50.5
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 9.0e-64 249.6 243 58.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 2.6e-63 248.1 228 58.8
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.8e-51 208.8 584 31.7
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 7.6e-47 193.4 259 42.5
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.7e-46 192.2 152 65.8
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.3e-43 181.8 214 49.1
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 4.8e-41 174.1 150 60.0
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.4e-40 172.6 133 68.4
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.5e-30 137.1 106 66.0
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.8e-27 129.0 113 54.0
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 8.8e-27 126.7 223 38.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.1e-24 119.8 188 38.3
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 2.4e-24 118.6 157 40.1
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.9e-23 114.0 142 49.3
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.0e-22 113.2 120 50.0
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-21 108.6 82 59.8
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.2e-21 107.8 133 41.4
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.1e-16 91.3 93 57.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.3e-16 90.9 105 48.6
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 9.1e-16 90.1 65 70.8
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.6e-15 89.4 82 59.8
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.0e-15 89.0 181 32.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.0e-11 75.1 66 65.2
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 7.5e-10 70.5 59 55.9
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 2.8e-09 68.6 484 21.7
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.8e-09 67.8 113 37.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 3.1e-08 65.1 130 39.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 4.1e-08 64.7 130 39.2
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 5.9e-07 60.8 83 48.2
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.0e-06 57.8 69 43.5


User provided reference genes

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