Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022188 Chenopodium quinoa HOM05D001131 ORTHO05D038213 3.1e-40 167.9 79 100.0
Ah.01g021930 Amaranthus hybridus HOM05D001131 ORTHO05D038213 1.2e-20 102.8 77 64.9
MELO3C015403.2 Cucumis melo HOM05D001131 ORTHO05D000972 4.0e-08 61.2 43 69.8
ClCG03G016210 Citrullus lanatus HOM05D001131 ORTHO05D000972 5.3e-08 60.8 46 65.2
Cpa.g.sc109.12 Carica papaya HOM05D001131 ORTHO05D000972 6.9e-08 60.5 80 47.5
Oeu017829.1 Olea europaea HOM05D001131 ORTHO05D000972 6.9e-08 60.5 77 46.8
Atru.chr1.3514 Acer truncatum HOM05D001131 ORTHO05D000972 1.5e-07 59.3 57 54.4
Aa31LG8G3470 Aethionema arabicum HOM05D001131 ORTHO05D000972 2.6e-07 58.5 60 56.7
Dinv37985 Davidia involucrata HOM05D001131 ORTHO05D000972 2.6e-07 58.5 60 53.3
Gohir.A02G118100 Gossypium hirsutum HOM05D001131 ORTHO05D000972 2.6e-07 58.5 55 54.5
Potri.001G188900 Populus trichocarpa HOM05D001131 ORTHO05D000972 2.6e-07 58.5 67 47.8
THA.LOC104810538 Tarenaya hassleriana HOM05D001131 ORTHO05D000972 2.6e-07 58.5 60 53.3
Gohir.D03G058700 Gossypium hirsutum HOM05D001131 ORTHO05D000972 3.4e-07 58.2 55 54.5
Gorai.003G062600 Gossypium raimondii HOM05D001131 ORTHO05D000972 3.4e-07 58.2 55 54.5
Dinv30445 Davidia involucrata HOM05D001131 ORTHO05D000972 4.5e-07 57.8 53 52.8
Gorai.011G072200 Gossypium raimondii HOM05D001131 ORTHO05D000972 4.5e-07 57.8 53 54.7
Hma1.2p1_1056F.1_g252660 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 4.5e-07 57.8 54 55.6
Oeu042060.1 Olea europaea HOM05D001131 ORTHO05D000972 4.5e-07 57.8 55 58.2
RcHm_v2.0_Chr2g0140151 Rosa chinensis HOM05D001131 ORTHO05D000972 4.5e-07 57.8 75 45.3
Sed0003167 Sechium edule HOM05D001131 ORTHO05D000972 4.5e-07 57.8 45 64.4
Duzib160G0537 Durio zibethinus HOM05D001131 ORTHO05D000972 5.8e-07 57.4 53 52.8
Duzib192G0172 Durio zibethinus HOM05D001131 ORTHO05D000972 5.8e-07 57.4 53 56.6
Lj3g0001717 Lotus japonicus HOM05D001131 ORTHO05D000972 5.8e-07 57.4 59 52.5
Sed0010672 Sechium edule HOM05D001131 ORTHO05D000972 5.8e-07 57.4 65 49.2
FvH4_6g32270 Fragaria vesca HOM05D001131 ORTHO05D000972 7.6e-07 57.0 76 46.1
FAN14G1987 Fragaria x ananassa HOM05D001131 ORTHO05D000972 7.6e-07 57.0 76 46.1
Hma1.2p1_0430F.1_g151480 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 7.6e-07 57.0 56 51.8
Sed0026072 Sechium edule HOM05D001131 ORTHO05D000972 7.6e-07 57.0 46 60.9
Thecc.06G098400 Theobroma cacao HOM05D001131 ORTHO05D000972 7.6e-07 57.0 53 54.7
HanXRQChr09g0275831 Helianthus annuus HOM05D001131 ORTHO05D000972 9.9e-07 56.6 56 55.4
Manes.04G133200 Manihot esculenta HOM05D001131 ORTHO05D000972 9.9e-07 56.6 56 53.6
QL05p020368 Quercus lobata HOM05D001131 ORTHO05D000972 9.9e-07 56.6 55 56.4
Sabra01G0152100 Salix brachista HOM05D001131 ORTHO05D000972 9.9e-07 56.6 63 47.6
SGA_v2.0_scaffold4G02021 Striga asiatica HOM05D001131 ORTHO05D000972 9.9e-07 56.6 58 53.4
Atru.chr7.1445 Acer truncatum HOM05D001131 ORTHO05D000972 1.3e-06 56.2 80 45.0
AT3G16330 Arabidopsis thaliana HOM05D001131 ORTHO05D000972 1.3e-06 56.2 77 46.8
arahy.Tifrunner.gnm1.ann1.646R5W Arachis hypogaea HOM05D001131 ORTHO05D000972 1.3e-06 56.2 55 52.7
Lsat_1_v5_gn_4_100360 Lactuca sativa HOM05D001131 ORTHO05D000972 1.3e-06 56.2 56 57.1
Lsat_1_v5_gn_4_100420 Lactuca sativa HOM05D001131 ORTHO05D000972 1.3e-06 56.2 56 57.1
TAR383G0743 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.3e-06 56.2 72 47.2
BcaC09g48596 Brassica carinata HOM05D001131 ORTHO05D000972 1.7e-06 55.8 58 53.4
BcaC09g48597 Brassica carinata HOM05D001131 ORTHO05D000972 1.7e-06 55.8 58 53.4
BolC1t04770H Brassica oleracea HOM05D001131 ORTHO05D000972 1.7e-06 55.8 58 53.4
COL.COLO4_30494 Corchorus olitorius HOM05D001131 ORTHO05D000972 1.7e-06 55.8 53 52.8
FAN02G1088 Fragaria x ananassa HOM05D001131 ORTHO05D000972 1.7e-06 55.8 68 50.0
Gohir.A10G066400 Gossypium hirsutum HOM05D001131 ORTHO05D000972 1.7e-06 55.8 53 52.8
Gohir.D10G067740 Gossypium hirsutum HOM05D001131 ORTHO05D000972 1.7e-06 55.8 53 52.8
vmacro18859 Vaccinium macrocarpon HOM05D001131 ORTHO05D000972 1.7e-06 55.8 53 52.8
Actinidia09444 Actinidia chinensis HOM05D001131 ORTHO05D000972 2.2e-06 55.5 55 50.9
DCAR_023076 Daucus carota HOM05D001131 ORTHO05D000972 2.2e-06 55.5 60 50.0
FAN05G1343 Fragaria x ananassa HOM05D001131 ORTHO05D000972 2.2e-06 55.5 76 43.4
Lsat_1_v5_gn_4_100240 Lactuca sativa HOM05D001131 ORTHO05D000972 2.2e-06 55.5 55 56.4
Oeu050602.1 Olea europaea HOM05D001131 ORTHO05D000972 2.2e-06 55.5 58 53.4
Oeu063934.1 Olea europaea HOM05D001131 ORTHO05D000972 2.2e-06 55.5 55 50.9
CANSAT56G3966 Cannabis sativa HOM05D001131 ORTHO05D000972 2.9e-06 55.1 56 50.0
ECA247G3519 Erigeron canadensis HOM05D001131 ORTHO05D000972 2.9e-06 55.1 53 52.8
Migut.I00904 Erythranthe guttata HOM05D001131 ORTHO05D000972 2.9e-06 55.1 58 55.2
Lj5C54T19 Lonicera japonica HOM05D001131 ORTHO05D000972 2.9e-06 55.1 56 53.6
MD17G1185000 Malus domestica HOM05D001131 ORTHO05D000972 2.9e-06 55.1 58 53.4
Oeu060489.1 Olea europaea HOM05D001131 ORTHO05D000972 2.9e-06 55.1 55 58.2
QL05p020373 Quercus lobata HOM05D001131 ORTHO05D000972 2.9e-06 55.1 55 54.5
Ah.01g021970 Amaranthus hybridus HOM05D001131 ORTHO05D000972 3.8e-06 54.7 56 50.0
DCAR_012047 Daucus carota HOM05D001131 ORTHO05D000972 3.8e-06 54.7 74 39.2
ECA232G4960 Erigeron canadensis HOM05D001131 ORTHO05D000972 3.8e-06 54.7 60 55.0
Thhalv10021537m.g Eutrema salsugineum HOM05D001131 ORTHO05D000972 3.8e-06 54.7 59 54.2
Nitab4.5_0001172g0030 Nicotiana tabacum HOM05D001131 ORTHO05D000972 3.8e-06 54.7 63 52.4
Nitab4.5_0003515g0020 Nicotiana tabacum HOM05D001131 ORTHO05D000972 3.8e-06 54.7 63 52.4
Oeu064195.1 Olea europaea HOM05D001131 ORTHO05D000972 3.8e-06 54.7 66 45.5
SGA_v2.0_scaffold68G22962 Striga asiatica HOM05D001131 ORTHO05D000972 3.8e-06 54.7 55 56.4
C01p47970 Brassica napus HOM05D001131 ORTHO05D000972 4.9e-06 54.3 59 47.5
Cc04_g02660 Coffea canephora HOM05D001131 ORTHO05D000972 4.9e-06 54.3 60 51.7
HanXRQChr09g0275841 Helianthus annuus HOM05D001131 ORTHO05D000972 4.9e-06 54.3 55 54.5
Peaxi162Scf00177g00002 Petunia axillaris HOM05D001131 ORTHO05D000972 4.9e-06 54.3 55 58.2
Sp3g14700 Schrenkiella parvula HOM05D001131 ORTHO05D000972 4.9e-06 54.3 58 51.7
Ciclev10026493m.g Citrus clementina HOM05D001131 ORTHO05D000972 6.4e-06 53.9 56 51.8
Gohir.D07G008600 Gossypium hirsutum HOM05D001131 ORTHO05D000972 6.4e-06 53.9 58 55.2
Gorai.001G008700 Gossypium raimondii HOM05D001131 ORTHO05D000972 6.4e-06 53.9 58 55.2
Lsat_1_v5_gn_4_100140 Lactuca sativa HOM05D001131 ORTHO05D000972 6.4e-06 53.9 55 54.5
Manes.03G025900 Manihot esculenta HOM05D001131 ORTHO05D000972 6.4e-06 53.9 76 47.4
Oeu026797.1 Olea europaea HOM05D001131 ORTHO05D000972 6.4e-06 53.9 55 54.5
Peaxi162Scf00177g00001 Petunia axillaris HOM05D001131 ORTHO05D000972 6.4e-06 53.9 53 58.5
Phvul.005G166700 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 6.4e-06 53.9 56 55.4
VMungo1080G0310 Vigna mungo HOM05D001131 ORTHO05D000972 6.4e-06 53.9 56 55.4
Ah.09g230700 Amaranthus hybridus HOM05D001131 ORTHO05D000972 8.4e-06 53.5 87 40.2
AL4G34500 Arabidopsis lyrata HOM05D001131 ORTHO05D000972 8.4e-06 53.5 58 50.0
AL4G34540 Arabidopsis lyrata HOM05D001131 ORTHO05D000972 8.4e-06 53.5 58 50.0
BolC3t17023H Brassica oleracea HOM05D001131 ORTHO05D000972 8.4e-06 53.5 58 50.0
Carub.0003s1608 Capsella rubella HOM05D001131 ORTHO05D000972 8.4e-06 53.5 58 51.7
Glyma.16G077400 Glycine max HOM05D001131 ORTHO05D000972 8.4e-06 53.5 70 47.1
Lsat_1_v5_gn_1_37021 Lactuca sativa HOM05D001131 ORTHO05D000972 8.4e-06 53.5 55 56.4
Lj9P511T33 Lonicera japonica HOM05D001131 ORTHO05D000972 8.4e-06 53.5 58 55.2
SalBow2G0158 Salvia bowleyana HOM05D001131 ORTHO05D000972 8.4e-06 53.5 55 54.5
Thecc.09G102000 Theobroma cacao HOM05D001131 ORTHO05D000972 8.4e-06 53.5 70 50.0


User provided reference genes

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