Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.4e-127 458.4 235 100.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.9e-122 442.6 235 97.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 7.3e-114 414.1 232 89.7
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.9e-101 372.9 225 84.0
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-96 356.3 228 77.6
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.1e-96 355.5 233 75.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.4e-95 352.1 223 79.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 9.9e-95 350.5 228 76.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.2e-94 349.4 228 76.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.9e-94 349.0 228 76.8
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-93 346.3 233 74.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.2e-93 345.5 220 78.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 7.1e-93 344.4 233 74.2
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 9.3e-93 344.0 228 75.0
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.7e-92 342.4 226 76.1
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.6e-92 341.7 229 74.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 7.9e-92 340.9 224 77.2
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.0e-91 340.5 229 74.7
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 3.0e-91 339.0 228 74.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.7e-91 337.4 229 73.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.7e-91 337.4 229 74.7
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-90 336.7 226 73.9
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.5e-90 336.7 228 73.7
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.9e-90 336.3 228 75.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.5e-90 335.9 228 74.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.5e-90 335.9 229 74.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 3.3e-90 335.5 226 73.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.6e-90 334.7 226 74.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 7.4e-90 334.3 228 73.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.4e-90 334.3 229 74.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 7.4e-90 334.3 229 74.7
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.3e-89 333.6 228 72.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.1e-89 332.8 226 73.9
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.8e-89 332.4 226 73.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.2e-89 331.3 229 72.9
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 6.2e-89 331.3 230 70.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 8.1e-89 330.9 226 74.8
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 8.1e-89 330.9 229 72.5
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 8.1e-89 330.9 226 73.5
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.1e-88 330.5 226 73.9
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-88 330.5 232 72.8
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.4e-88 330.1 226 73.0
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.4e-88 330.1 228 72.8
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.8e-88 329.7 228 71.1
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.8e-88 329.7 228 71.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.8e-88 329.7 229 69.4
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.4e-88 329.3 226 73.5
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.4e-88 329.3 226 74.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-88 329.3 233 70.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.1e-88 328.9 228 71.9
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.1e-88 328.9 226 73.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 226 73.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 228 72.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.0e-88 328.6 228 71.9
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 6.9e-88 327.8 228 70.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-87 326.6 232 70.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 71.8
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 3.4e-87 325.5 235 69.8
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.4e-87 325.5 229 72.5
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.4e-87 325.5 229 71.6
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 3.4e-87 325.5 229 72.1
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 4.5e-87 325.1 230 67.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.8e-87 324.7 224 75.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 7.6e-87 324.3 224 73.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 7.6e-87 324.3 226 72.1
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 9.9e-87 323.9 226 71.7
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.2e-86 322.8 226 72.6
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.9e-86 322.4 229 70.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.9e-86 322.4 229 70.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.9e-86 322.4 229 70.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.9e-86 322.4 211 78.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.8e-86 322.0 228 70.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.8e-86 322.0 229 71.2
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.8e-86 322.0 224 71.9
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.8e-86 322.0 259 65.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.9e-86 321.6 228 70.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 4.9e-86 321.6 229 70.7
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 4.9e-86 321.6 228 68.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.4e-86 321.2 228 70.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.4e-86 321.2 226 72.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 8.4e-86 320.9 229 70.7
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 8.4e-86 320.9 229 71.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 8.4e-86 320.9 229 71.2
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 8.4e-86 320.9 229 71.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 69.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 70.2
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.4e-85 320.1 228 69.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.9e-85 319.7 229 70.7
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.4e-85 319.3 228 68.9
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.2e-85 318.9 229 69.4
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 4.2e-85 318.5 227 69.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.2e-85 318.5 228 69.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 4.2e-85 318.5 228 69.3
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 4.2e-85 318.5 224 68.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 7.1e-85 317.8 224 70.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 7.1e-85 317.8 228 69.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 7.1e-85 317.8 230 69.1
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 7.1e-85 317.8 224 70.5
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.1e-85 317.8 228 68.9
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.2e-84 317.0 226 70.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.2e-84 317.0 193 81.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.1e-84 316.2 228 69.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.1e-84 316.2 228 68.9
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.0e-84 314.7 202 78.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 7.9e-84 314.3 209 75.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 7.9e-84 314.3 229 67.7
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.0e-83 313.9 195 81.0
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-83 313.5 224 71.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.3e-83 313.5 224 71.0
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.9e-83 312.0 225 69.8
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 8.7e-83 310.8 235 68.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.5e-82 310.1 229 69.4
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 3.3e-82 308.9 228 66.2
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 7.4e-82 307.8 224 69.6
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.1e-80 302.4 228 66.7
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.5e-79 300.1 229 65.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 7.6e-79 297.7 204 72.5
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.6e-79 297.7 232 65.9
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.7e-78 296.6 192 76.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.2e-77 292.0 311 50.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.5e-76 288.9 209 67.5
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 7.9e-76 287.7 228 64.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.9e-75 285.4 235 62.1
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-74 282.3 223 67.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 5.7e-74 281.6 235 63.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-73 279.6 204 69.6
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.1e-72 275.4 223 65.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.9e-66 256.5 238 59.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.3e-64 248.4 173 72.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.0e-62 244.2 141 87.9
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 8.5e-62 241.1 147 82.3
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 9.4e-61 237.7 225 55.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 7.9e-60 234.6 223 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.9e-59 232.3 235 50.6
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.1e-58 230.7 235 51.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.7e-58 227.6 144 79.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.3e-57 227.3 179 67.0
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.1e-56 222.6 133 82.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.6e-55 219.5 213 57.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.5e-54 214.5 124 87.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 3.6e-52 209.1 144 74.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.6e-50 203.0 143 72.0
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-42 177.6 141 61.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-42 176.0 119 73.1
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 9.7e-42 174.5 134 63.4
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.7e-41 173.7 135 64.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.2e-41 173.3 144 58.3
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 8.2e-41 171.4 146 61.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.3e-40 168.7 202 46.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.0e-35 152.5 183 44.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 7.5e-34 148.3 126 62.7
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.1e-32 144.4 98 74.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 9.1e-32 141.4 108 67.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.0e-31 140.2 191 43.5
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.5e-31 139.4 85 78.8
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.2e-30 136.7 100 70.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-28 130.2 114 58.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.7e-28 129.8 88 73.9
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-27 127.9 82 78.0
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-27 127.9 85 75.3
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 2.0e-26 123.6 95 68.4
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 4.4e-26 122.5 76 80.3
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 5.7e-26 122.1 119 54.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 9.8e-26 121.3 84 71.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.8e-24 117.1 85 65.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 7.0e-24 115.2 103 57.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.0e-24 115.2 85 70.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-23 114.0 77 75.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.9e-23 112.1 85 68.2
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-21 106.7 128 50.0
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.2e-20 104.4 95 61.1
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.3e-19 100.1 68 70.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 5.7e-18 95.5 182 31.3
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.7e-15 86.7 63 68.3
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 5.9e-15 85.5 51 82.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 5.9e-15 85.5 88 51.1
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 7.8e-15 85.1 219 29.2
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.0e-14 84.7 61 67.2
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.6e-12 77.4 55 67.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.3e-11 73.6 177 29.9
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.5e-10 70.9 67 56.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.5e-10 70.9 49 67.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-10 70.5 58 60.3


User provided reference genes

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