Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 5.7e-49 197.2 96 100.0
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.1e-47 191.0 96 97.9
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 4.9e-40 167.5 96 83.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.1e-36 156.4 92 81.5
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.1e-35 152.1 95 74.7
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.7e-35 151.0 95 75.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.8e-34 149.1 92 77.2
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.8e-34 149.1 92 77.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 5.2e-34 147.5 94 72.3
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 5.2e-34 147.5 93 76.3
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.4e-33 144.8 95 72.6
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 3.4e-33 144.8 95 73.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 3.4e-33 144.8 93 73.1
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 4.4e-33 144.4 95 73.7
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 4.4e-33 144.4 95 73.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.4e-33 144.4 95 73.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.4e-33 144.4 95 71.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 7.5e-33 143.7 88 75.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 9.8e-33 143.3 92 75.0
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.3e-32 142.9 86 75.6
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.7e-32 142.5 95 73.7
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.2e-32 142.1 92 73.9
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.9e-32 141.7 92 73.9
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.9e-32 141.7 86 75.6
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 3.7e-32 141.4 95 70.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 4.9e-32 141.0 88 75.0
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 4.9e-32 141.0 95 69.5
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 6.4e-32 140.6 95 71.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.1e-31 139.8 86 75.6
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.1e-31 139.8 95 69.5
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-31 139.4 88 73.9
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.4e-31 139.4 93 73.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.4e-31 139.4 93 73.1
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.9e-31 139.0 79 79.7
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.9e-31 139.0 89 70.8
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.4e-31 138.7 95 71.6
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.4e-31 138.7 91 73.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.4e-31 138.7 93 73.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.2e-31 138.3 91 73.6
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 3.2e-31 138.3 89 73.0
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.2e-31 138.3 86 75.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 4.1e-31 137.9 79 78.5
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.4e-31 137.5 95 70.5
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 5.4e-31 137.5 93 73.1
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.4e-31 137.5 88 73.9
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 5.4e-31 137.5 88 73.9
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.4e-31 137.5 88 73.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 7.0e-31 137.1 97 71.1
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 9.2e-31 136.7 92 70.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 9.2e-31 136.7 95 70.5
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 9.2e-31 136.7 95 68.4
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 9.2e-31 136.7 95 70.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.2e-30 136.3 95 67.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.6e-30 136.0 92 73.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 68.4
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 70.5
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 69.5
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 68.4
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.6e-30 136.0 93 69.9
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.0e-30 135.6 89 71.9
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 2.0e-30 135.6 95 70.5
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.0e-30 135.6 95 69.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.0e-30 135.6 95 69.5
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.7e-30 135.2 95 67.4
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.5e-30 134.8 89 71.9
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.5e-30 134.8 95 67.4
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 4.6e-30 134.4 87 71.3
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 4.6e-30 134.4 87 71.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 4.6e-30 134.4 95 68.4
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 4.6e-30 134.4 88 71.6
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 6.0e-30 134.0 99 66.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 7.8e-30 133.7 82 74.4
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.0e-29 133.3 85 71.8
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.3e-29 132.9 91 69.2
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.3e-29 132.9 111 62.2
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.7e-29 132.5 91 71.4
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.7e-29 132.5 93 66.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.3e-29 132.1 94 63.8
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.3e-29 132.1 93 66.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 3.0e-29 131.7 91 71.4
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.0e-29 131.0 94 63.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 5.0e-29 131.0 94 63.8
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 5.0e-29 131.0 94 63.8
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 5.0e-29 131.0 95 65.3
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 8.6e-29 130.2 88 69.3
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 8.6e-29 130.2 84 71.4
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.1e-28 129.8 95 65.3
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.1e-28 129.8 95 66.3
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.5e-28 129.4 94 63.8
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.9e-28 129.0 86 67.4
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.9e-28 129.0 86 67.4
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 3.3e-28 128.3 84 69.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 5.6e-28 127.5 91 63.7
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 9.5e-28 126.7 94 62.8
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.6e-27 125.9 92 64.1
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.6e-27 125.9 92 64.1
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.6e-27 125.9 92 64.1
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.6e-27 125.9 92 64.1
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 6.2e-27 124.0 92 63.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.1e-26 123.2 76 72.4
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-25 119.8 93 59.1
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.4e-25 118.2 86 61.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 3.4e-25 118.2 86 61.6
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 5.8e-25 117.5 63 81.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-24 116.3 66 77.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.9e-24 115.2 66 78.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.9e-24 115.2 115 53.9
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.7e-24 114.8 68 76.5
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 8.3e-24 113.6 78 64.1
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.4e-23 112.1 84 61.9
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 2.7e-22 108.6 72 69.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.5e-22 108.2 66 71.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.3e-21 106.3 66 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.0e-21 105.1 84 56.0
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 8.6e-21 103.6 76 59.2
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 3.3e-20 101.7 63 71.4
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 9.5e-20 100.1 95 53.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 8.1e-19 97.1 63 68.3
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-18 96.3 81 64.2
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.3e-18 95.5 64 67.2
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-18 95.5 63 68.3
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 3.1e-18 95.1 91 53.8
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.1e-18 95.1 52 78.8
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 8.9e-18 93.6 62 67.7
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.4e-15 86.3 63 65.1
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 3.2e-15 85.1 76 53.9
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 9.2e-15 83.6 60 65.0
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.2e-14 83.2 64 67.2
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 6.0e-14 80.9 73 50.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 6.0e-14 80.9 64 60.9
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.3e-13 79.0 78 50.0
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.3e-12 75.1 80 50.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.2e-11 73.2 49 67.3
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.1e-11 72.4 61 59.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.1e-07 60.1 33 72.7
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 5.4e-07 57.8 60 45.0


User provided reference genes

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