Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-133 479.9 258 100.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-130 469.9 252 99.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.1e-122 441.0 252 90.5
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.5e-120 436.4 252 92.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.0e-117 426.0 252 87.3
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 252 86.5
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 252 86.5
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.5e-117 425.2 252 86.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.9e-117 424.5 250 86.4
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 5.9e-117 424.5 252 86.5
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.3e-116 422.5 252 85.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.9e-116 422.2 253 86.2
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-116 421.8 252 86.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.8e-116 421.8 252 86.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 5.0e-116 421.4 250 86.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 5.0e-116 421.4 250 86.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.6e-116 421.0 253 85.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 6.6e-116 421.0 250 86.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 8.6e-116 420.6 251 85.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 8.6e-116 420.6 252 84.9
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.1e-115 420.2 253 85.0
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-115 420.2 252 86.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.9e-115 419.5 252 84.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.5e-115 419.1 253 85.4
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.3e-115 418.7 253 84.6
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.5e-115 417.2 252 85.3
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 9.5e-115 417.2 253 82.6
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-114 416.4 251 84.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.6e-114 416.4 250 85.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.8e-114 415.6 253 82.2
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.8e-114 415.6 250 84.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.6e-114 415.2 253 81.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.6e-114 415.2 251 85.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.7e-114 414.8 252 85.7
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.1e-114 414.5 252 84.9
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 8.0e-114 414.1 250 84.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 8.0e-114 414.1 253 81.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 8.0e-114 414.1 251 84.9
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 8.0e-114 414.1 251 84.9
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.0e-113 413.7 250 85.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.0e-113 413.7 252 84.5
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.0e-113 413.7 251 84.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-113 413.7 253 81.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.0e-113 413.7 255 82.7
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 252 84.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 252 84.5
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-113 413.3 253 82.2
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 6.8e-113 411.0 249 85.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 6.8e-113 411.0 250 84.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 8.9e-113 410.6 256 85.2
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-112 410.2 255 82.4
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-112 410.2 250 83.2
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 255 81.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.5e-112 409.8 253 83.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-112 409.8 250 84.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-112 409.8 251 83.3
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.0e-112 409.5 255 82.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.6e-112 409.1 254 85.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.4e-112 408.7 252 82.9
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.4e-112 408.7 252 82.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.4e-112 408.3 249 85.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.4e-112 408.3 252 84.1
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 7.5e-112 407.5 253 83.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.3e-111 406.8 252 83.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-111 406.8 251 84.1
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.7e-111 406.4 253 85.0
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.7e-111 406.4 253 82.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 4.9e-111 404.8 254 84.3
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 8.3e-111 404.1 250 82.0
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 8.3e-111 404.1 252 82.5
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-110 403.7 250 81.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.8e-110 402.9 239 87.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.4e-110 402.5 250 80.8
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 5.4e-110 401.4 252 83.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 5.4e-110 401.4 252 82.5
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-109 400.2 250 80.8
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 2.0e-109 399.4 253 81.0
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.0e-109 399.4 252 80.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.0e-109 399.4 250 81.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.6e-109 398.3 252 81.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 5.9e-109 397.9 245 81.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 5.9e-109 397.9 250 81.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 5.9e-109 397.9 250 81.6
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.8e-109 397.5 252 81.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.8e-109 397.5 255 79.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.3e-108 396.7 250 80.0
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.3e-108 396.0 250 80.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.9e-108 395.6 246 85.4
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.9e-108 395.6 253 80.6
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.9e-108 395.6 255 79.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.6e-108 394.4 253 78.7
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 4.3e-107 391.7 252 80.6
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.6e-107 391.3 235 84.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 7.3e-107 391.0 250 78.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.3e-107 391.0 257 79.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.6e-106 389.8 249 81.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.6e-106 388.7 249 80.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.6e-106 388.7 235 84.3
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-105 386.7 253 78.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.4e-105 386.7 253 78.7
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.4e-105 386.7 253 80.2
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 4.0e-105 385.2 251 78.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 4.0e-105 385.2 251 78.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 4.0e-105 385.2 251 78.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.2e-105 384.8 253 78.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.0e-104 382.9 253 79.1
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-104 382.9 253 77.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-104 382.9 253 77.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-104 382.9 253 77.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.0e-104 382.9 253 77.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.6e-104 382.5 251 78.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.4e-104 382.1 251 78.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-104 381.7 251 78.1
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-104 381.7 251 78.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.8e-104 381.3 251 78.1
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 5.8e-104 381.3 251 78.1
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.8e-104 381.3 251 78.1
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.8e-104 381.3 252 80.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.8e-104 381.3 251 81.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.7e-103 379.8 253 77.9
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-103 379.8 251 77.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.7e-103 379.8 253 77.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.9e-103 379.0 251 80.5
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.6e-101 371.7 252 79.4
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.0e-101 371.3 252 80.2
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.0e-100 370.5 252 79.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.0e-100 369.0 263 74.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.1e-99 367.1 257 75.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.9e-99 366.3 238 80.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.2e-98 361.3 251 76.1
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.1e-97 360.5 226 83.2
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.5e-96 356.7 218 85.8
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.5e-96 356.7 226 81.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.8e-96 354.8 225 84.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 6.4e-95 351.3 253 74.7
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.3e-95 350.9 238 75.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.4e-94 350.1 241 78.8
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.4e-94 349.4 210 86.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.6e-92 341.3 219 79.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.6e-92 340.9 250 72.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.9e-91 339.7 219 79.9
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.6e-91 338.2 236 73.3
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 9.5e-91 337.4 234 73.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.6e-90 335.5 212 83.5
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.7e-84 316.6 252 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 6.8e-81 304.7 218 70.2
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.1e-78 297.4 232 64.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.1e-77 293.1 254 61.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-76 290.0 250 63.6
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 8.1e-74 281.2 253 61.3
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.3e-73 278.5 234 67.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 9.0e-73 277.7 205 69.3
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 9.9e-72 274.2 194 75.3
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.1e-70 268.1 251 60.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.7e-69 266.2 257 59.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.6e-67 258.5 209 66.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.5e-64 248.8 239 61.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-58 230.3 235 57.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.5e-54 216.5 202 55.9
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.2e-53 214.2 130 81.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.7e-52 208.0 195 56.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.3e-51 206.1 120 86.7
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.1e-49 199.5 126 81.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.5e-43 179.9 179 55.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.1e-41 172.9 108 81.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 5.5e-38 162.2 191 51.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.8e-34 149.1 127 64.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.8e-25 120.6 84 70.2
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.0e-24 117.1 69 85.5


User provided reference genes

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