Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022048 Chenopodium quinoa HOM05D006661 ORTHO05D008369 3.0e-116 421.8 204 100.0
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 1.6e-104 382.9 203 87.7
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 1.7e-103 379.4 203 86.7
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 5.0e-103 377.9 203 86.2
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 4.7e-101 371.3 203 84.7
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 6.2e-101 370.9 203 84.7
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 8.0e-101 370.5 203 83.7
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 8.0e-101 370.5 203 84.2
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 1.0e-100 370.2 203 83.7
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 1.4e-100 369.8 203 84.2
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 6.8e-100 367.5 203 82.8
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 6.8e-100 367.5 203 82.8
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 8.9e-100 367.1 203 83.7
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 8.9e-100 367.1 203 82.8
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 1.2e-99 366.7 203 83.7
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 1.2e-99 366.7 203 82.3
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 1.5e-99 366.3 203 82.8
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 2.0e-99 365.9 203 82.3
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 2.0e-99 365.9 203 83.3
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 2.6e-99 365.5 203 83.7
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 4.4e-99 364.8 203 82.3
unitig_748.g7518 Utricularia gibba HOM05D006661 ORTHO05D008369 4.4e-99 364.8 204 82.8
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 7.5e-99 364.0 203 82.3
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 9.8e-99 363.6 203 82.8
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 9.8e-99 363.6 203 82.8
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 1.3e-98 363.2 203 83.3
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 1.3e-98 363.2 203 81.8
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 1.7e-98 362.8 203 81.8
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 1.7e-98 362.8 203 81.8
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 2.9e-98 362.1 203 81.3
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 3.7e-98 361.7 203 80.8
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 4.9e-98 361.3 203 82.3
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 4.9e-98 361.3 203 82.8
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 6.4e-98 360.9 203 80.3
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 1.1e-97 360.1 203 81.8
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 2.4e-97 359.0 203 80.8
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 4.1e-97 358.2 203 81.8
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 5.4e-97 357.8 203 81.8
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 5.4e-97 357.8 203 80.8
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 9.2e-97 357.1 203 79.8
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 9.2e-97 357.1 203 80.3
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 9.2e-97 357.1 203 81.3
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 9.2e-97 357.1 203 80.3
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 9.2e-97 357.1 203 80.3
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.2e-96 356.7 203 80.8
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 1.2e-96 356.7 203 80.8
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 1.2e-96 356.7 203 81.3
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 1.2e-96 356.7 203 79.3
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 2.0e-96 355.9 203 79.3
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 2.0e-96 355.9 203 79.3
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 2.7e-96 355.5 203 80.8
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 3.5e-96 355.1 203 79.3
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 6.0e-96 354.4 203 79.3
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 7.8e-96 354.0 203 80.3
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 1.0e-95 353.6 203 79.3
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 1.7e-95 352.8 203 78.8
PSO832G3146 Papaver somniferum HOM05D006661 ORTHO05D008369 1.7e-95 352.8 204 81.4
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 2.3e-95 352.4 198 82.3
AUR62009178 Chenopodium quinoa HOM05D006661 ORTHO05D008369 3.0e-95 352.1 176 98.3
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 3.0e-95 352.1 203 78.8
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 3.0e-95 352.1 203 79.3
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 3.0e-95 352.1 203 78.3
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 3.0e-95 352.1 203 78.8
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 3.9e-95 351.7 203 77.3
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 6.6e-95 350.9 203 79.3
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 6.6e-95 350.9 203 78.8
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 1.1e-94 350.1 203 77.8
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 3.3e-94 348.6 203 77.3
vmacro00160 Vaccinium macrocarpon HOM05D006661 ORTHO05D008369 4.3e-94 348.2 196 82.1
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 4.3e-94 348.2 203 76.4
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 5.6e-94 347.8 203 77.8
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 5.6e-94 347.8 203 77.3
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 7.3e-94 347.4 203 77.3
Manes.16G078200 Manihot esculenta HOM05D006661 ORTHO05D008369 9.5e-94 347.1 200 79.0
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 1.2e-93 346.7 203 78.3
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 1.6e-93 346.3 203 76.4
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 4.7e-93 344.7 203 79.8
Cpa.g.sc7.195 Carica papaya HOM05D006661 ORTHO05D008369 8.1e-93 344.0 191 83.8
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 1.8e-92 342.8 203 76.4
Haze_18212 Corylus avellana HOM05D006661 ORTHO05D008369 6.8e-92 340.9 191 81.2
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 9.8e-91 337.0 191 80.1
ATR0789G168 Amborella trichopoda HOM05D006661 ORTHO05D008369 1.7e-90 336.3 204 74.5
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 6.4e-90 334.3 198 77.8
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 8.3e-90 334.0 191 79.1
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 8.3e-90 334.0 191 79.1
DCAR_003069 Daucus carota HOM05D006661 ORTHO05D008369 4.1e-89 331.6 189 78.8
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 7.1e-89 330.9 191 78.5
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 3.5e-88 328.6 198 74.7
EL10Ac2g03924 Beta vulgaris HOM05D006661 ORTHO05D008369 1.7e-87 326.2 212 77.4
HPP92_005507 Vanilla planifolia HOM05D006661 ORTHO05D008369 1.1e-86 323.6 203 72.4
MELO3C030341.2 Cucumis melo HOM05D006661 ORTHO05D008369 1.2e-80 303.5 264 59.8
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 2.3e-79 299.3 203 69.5
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.3e-74 283.5 164 80.5
Lj8A552G6 Lonicera japonica HOM05D006661 ORTHO05D008369 1.1e-73 280.4 163 81.0
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 4.3e-70 268.5 201 60.2
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 5.6e-70 268.1 212 64.6
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 1.3e-69 266.9 196 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 3.6e-69 265.4 197 61.4
SMO169G0297 Selaginella moellendorffii HOM05D006661 ORTHO05D008369 6.2e-69 264.6 190 63.2
Sc23g0005520 Simmondsia chinensis HOM05D006661 ORTHO05D008369 1.4e-65 253.4 134 87.3
FAN27G1843 Fragaria x ananassa HOM05D006661 ORTHO05D008369 6.6e-63 244.6 163 73.0
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 4.8e-61 238.4 132 86.4
Sabra06G0180500 Salix brachista HOM05D006661 ORTHO05D008369 1.4e-60 236.9 134 80.6
CANSAT78G0664 Cannabis sativa HOM05D006661 ORTHO05D008369 1.1e-54 217.2 119 86.6
SEGI_00170 Sequoiadendron giganteum HOM05D006661 ORTHO05D008369 7.6e-51 204.5 131 71.0
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 2.5e-49 199.5 108 85.2
CANSAT25G1095 Cannabis sativa HOM05D006661 ORTHO05D008369 3.8e-42 175.6 96 85.4
Sabra06G0180400 Salix brachista HOM05D006661 ORTHO05D008369 1.4e-41 173.7 98 78.6
MD08G1045300 Malus domestica HOM05D006661 ORTHO05D008369 3.9e-39 165.6 98 74.5
Cre02.g110450 Chlamydomonas reinhardtii HOM05D006661 ORTHO05D008369 6.9e-36 154.8 203 39.4
QL02p001525 Quercus lobata HOM05D006661 ORTHO05D008369 1.0e-34 151.0 94 72.3
MCO14G523 Micromonas commoda HOM05D006661 ORTHO05D008369 7.9e-32 141.4 134 47.0
PRCOL_00000611 Prasinoderma coloniale HOM05D006661 ORTHO05D008369 5.3e-28 128.6 193 34.7
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 2.9e-18 96.3 222 30.2
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 1.2e-16 90.9 184 29.3
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 6.7e-15 85.1 45 91.1
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 6.7e-15 85.1 45 91.1
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 6.7e-15 85.1 45 91.1
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 2.6e-14 83.2 45 88.9
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 1.3e-10 70.9 159 30.2
COL.COLO4_21031 Corchorus olitorius HOM05D006661 ORTHO05D008369 2.2e-10 70.1 44 68.2
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 5.5e-09 65.5 162 32.7
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 7.2e-09 65.1 157 33.1
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 1.6e-08 63.9 123 34.1
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 3.6e-08 62.8 158 31.0
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 4.7e-08 62.4 162 31.5
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 4.7e-08 62.4 158 28.5
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 6.1e-08 62.0 162 32.7
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 6.1e-08 62.0 162 30.2
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 8.0e-08 61.6 162 31.5
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 8.0e-08 61.6 158 31.6
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 8.0e-08 61.6 162 31.5
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.4e-07 60.8 149 28.2
Nitab4.5_0004055g0120 Nicotiana tabacum HOM05D006661 ORTHO05D008369 1.8e-07 60.5 47 51.1
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.3e-07 60.1 123 34.1
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 2.3e-07 60.1 162 32.1
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 2.3e-07 60.1 161 30.4
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 3.0e-07 59.7 165 31.5
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 3.0e-07 59.7 114 35.1
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 4.0e-07 59.3 122 32.8
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 4.0e-07 59.3 162 30.9
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 5.2e-07 58.9 123 35.8
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 5.2e-07 58.9 123 35.8
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 5.2e-07 58.9 161 29.8
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 6.8e-07 58.5 162 30.2
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 8.8e-07 58.2 123 33.3
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 1.2e-06 57.8 158 29.1
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.0e-06 57.0 158 28.5
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 2.6e-06 56.6 113 32.7
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 3.4e-06 56.2 157 29.3
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 4.4e-06 55.8 113 31.9
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 5.7e-06 55.5 114 33.3
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 5.7e-06 55.5 158 27.8
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 5.7e-06 55.5 123 33.3
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 7.5e-06 55.1 126 34.1
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 7.5e-06 55.1 153 26.8
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 9.8e-06 54.7 162 29.6
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 9.8e-06 54.7 156 30.8


User provided reference genes

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