Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.8e-211 738.4 384 100.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 5.4e-175 617.8 388 81.4
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.0e-152 541.6 389 72.5
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 4.3e-148 528.5 370 74.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 4.5e-145 518.5 370 72.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.8e-144 515.4 408 65.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.9e-143 513.1 366 71.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.6e-142 508.8 371 70.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 6.1e-142 508.1 390 67.2
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.1e-142 508.1 372 69.9
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 7.9e-142 507.7 366 71.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.9e-141 505.4 429 62.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.7e-141 504.6 359 74.9
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.1e-140 503.8 395 67.1
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.0e-140 503.1 369 69.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.7e-140 501.5 427 62.8
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 5.7e-140 501.5 376 69.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.7e-139 500.0 364 69.5
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.7e-139 500.0 385 68.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.7e-139 498.8 373 68.4
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.8e-139 498.4 375 69.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 6.3e-139 498.0 402 63.9
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 8.2e-139 497.7 376 68.9
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.8e-138 496.5 369 69.1
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 9.1e-138 494.2 372 70.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.6e-137 492.7 372 68.3
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 2.6e-137 492.7 365 69.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.6e-137 492.7 370 68.9
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.0e-136 488.4 367 68.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.2e-135 485.7 371 68.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.2e-135 485.3 373 67.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 4.2e-135 485.3 371 66.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 9.4e-135 484.2 368 66.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.2e-134 483.8 370 67.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.7e-134 482.6 372 66.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 6.1e-134 481.5 370 67.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 6.1e-134 481.5 379 65.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.1e-134 481.5 401 65.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 7.9e-134 481.1 373 66.0
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 7.9e-134 481.1 380 65.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.0e-133 480.7 398 64.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 3.0e-133 479.2 366 66.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.1e-132 477.2 369 66.1
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.5e-132 476.9 357 68.6
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.0e-132 476.5 361 66.5
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.0e-132 476.5 372 65.6
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.6e-132 476.1 402 62.2
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.3e-132 475.7 362 67.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 9.7e-132 474.2 378 65.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.8e-131 472.6 363 68.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.8e-131 472.6 363 68.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.8e-131 472.6 371 65.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 6.3e-131 471.5 358 66.8
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.3e-131 471.5 358 66.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.2e-131 471.1 371 64.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.2e-131 471.1 371 66.3
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.1e-130 469.2 366 66.7
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.1e-130 468.8 361 65.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 4.1e-130 468.8 359 66.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 7.0e-130 468.0 375 65.1
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.1e-130 467.6 371 65.8
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-129 467.2 366 66.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.6e-129 466.8 360 66.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.0e-129 466.5 400 63.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.5e-129 465.7 365 66.8
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.5e-128 461.5 351 68.9
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 6.5e-128 461.5 338 70.1
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.1e-127 460.7 371 66.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.9e-127 459.9 373 64.6
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 5.5e-127 458.4 287 77.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.2e-126 457.2 287 78.0
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.1e-126 456.4 445 56.6
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.6e-126 455.7 377 62.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 4.7e-126 455.3 364 63.5
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.3e-125 453.0 363 64.2
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 6.7e-125 451.4 364 64.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 6.7e-125 451.4 371 63.9
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 8.8e-125 451.1 382 61.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.5e-124 450.3 377 63.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.3e-124 449.1 373 64.1
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.2e-123 446.4 287 76.3
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.8e-122 443.4 381 61.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.0e-122 441.4 372 61.0
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.0e-121 439.9 373 61.1
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.0e-120 437.6 376 60.6
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.9e-120 436.0 379 61.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 8.5e-120 434.5 317 70.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.5e-119 433.7 367 61.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 5.5e-119 431.8 373 60.6
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 9.4e-119 431.0 375 60.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.6e-118 430.3 306 69.3
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.7e-118 429.5 375 61.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.7e-118 429.5 374 62.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.7e-118 428.7 375 58.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 8.0e-118 427.9 371 59.8
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-117 426.8 368 59.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 5.2e-117 425.2 372 60.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 8.8e-117 424.5 374 61.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-116 423.3 365 60.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-116 423.3 365 60.0
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.6e-116 422.9 371 60.1
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.4e-116 422.2 364 59.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.8e-116 421.0 361 61.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 1.3e-115 420.6 286 73.1
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-115 419.9 367 59.7
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.2e-115 419.9 342 62.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.8e-115 419.5 363 62.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.7e-115 419.1 365 59.7
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 6.3e-115 418.3 364 61.3
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 4.5e-113 412.1 365 60.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.7e-113 411.4 365 60.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.0e-112 411.0 373 60.6
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.0e-112 411.0 368 59.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-112 410.6 372 59.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.8e-112 409.1 365 60.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.8e-112 409.1 361 60.1
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 5.0e-112 408.7 357 56.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 2.5e-111 406.4 375 57.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.2e-111 405.6 372 60.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 9.5e-111 404.4 355 60.3
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-110 403.3 365 59.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 2.1e-110 403.3 365 59.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-110 402.9 365 59.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-110 402.9 365 59.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.1e-110 401.7 499 47.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 8.0e-110 401.4 369 59.6
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 8.0e-110 401.4 361 59.6
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 5.2e-109 398.7 365 58.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.4e-108 396.0 368 56.8
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.7e-107 393.7 290 64.5
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.8e-107 392.9 350 58.9
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 4.9e-107 392.1 349 56.7
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 4.7e-102 375.6 348 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.2e-100 370.9 344 56.4
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.7e-96 357.1 294 62.6
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.3e-95 352.4 286 64.0
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.2e-93 345.5 390 48.2
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.9e-90 337.0 251 68.5
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.0e-72 278.1 196 71.4
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 4.0e-61 239.6 283 44.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.3e-54 218.0 171 65.5
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.4e-53 214.5 287 41.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 9.0e-53 211.8 154 67.5
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 8.2e-46 188.7 257 44.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.1e-33 147.5 247 39.7
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-27 128.6 189 40.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 9.7e-23 112.1 172 39.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.3e-22 111.7 112 57.1
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.9e-19 100.5 282 29.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 2.9e-19 100.5 72 66.7
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.8e-19 100.1 106 52.8
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 8.8e-16 89.0 124 48.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 4.5e-12 76.6 56 64.3


User provided reference genes

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