Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021969 Chenopodium quinoa HOM05D043511 ORTHO05D043996 7.4e-139 497.7 348 100.0
AUR62012687 Chenopodium quinoa HOM05D043511 ORTHO05D043996 4.1e-97 359.0 340 80.0
Ah.09g234980 Amaranthus hybridus HOM05D002838 ORTHO05D002114 7.5e-14 82.4 110 47.3
Prupe.4G022600 Prunus persica HOM05D002838 ORTHO05D002114 1.8e-12 77.8 92 47.8
DCAR_028173 Daucus carota HOM05D002838 ORTHO05D002114 1.6e-11 74.7 64 54.7
MD05G1343900 Malus domestica HOM05D002838 ORTHO05D002114 4.5e-11 73.2 102 43.1
CDE11G0234 Ceratophyllum demersum HOM05D002838 ORTHO05D002114 5.9e-11 72.8 63 50.8
MD10G1319800 Malus domestica HOM05D002838 ORTHO05D002114 1.7e-10 71.2 93 45.2
MSTRG.15981 Avicennia marina HOM05D002838 ORTHO05D002114 1.1e-09 68.6 69 39.1
Dinv13882 Davidia involucrata HOM05D002838 ORTHO05D002114 1.1e-09 68.6 133 33.1
Nitab4.5_0001913g0060 Nicotiana tabacum HOM05D002838 ORTHO05D002114 1.9e-09 67.8 165 32.1
Actinidia36942 Actinidia chinensis HOM05D000032 ORTHO05D007441 2.5e-09 67.4 52 57.7
Duzib213G1073 Durio zibethinus HOM05D002838 ORTHO05D002114 2.5e-09 67.4 49 59.2
ECA248G1648 Erigeron canadensis HOM05D002838 ORTHO05D002114 2.5e-09 67.4 52 55.8
Lsat_1_v5_gn_7_108620 Lactuca sativa HOM05D002838 ORTHO05D002114 4.2e-09 66.6 51 54.9
ECA236G3848 Erigeron canadensis HOM05D002838 ORTHO05D002114 5.5e-09 66.2 49 57.1
Gohir.D06G153900 Gossypium hirsutum HOM05D002838 ORTHO05D002114 5.5e-09 66.2 53 54.7
Gorai.010G179900 Gossypium raimondii HOM05D002838 ORTHO05D002114 5.5e-09 66.2 53 54.7
Sc16g0006120 Simmondsia chinensis HOM05D002838 ORTHO05D002114 5.5e-09 66.2 49 63.3
HanXRQChr16g0515031 Helianthus annuus HOM05D002838 ORTHO05D002114 7.2e-09 65.9 49 55.1
QL08p010527 Quercus lobata HOM05D002838 ORTHO05D002114 7.2e-09 65.9 72 47.2
HanXRQChr15g0494361 Helianthus annuus HOM05D002838 ORTHO05D002114 9.4e-09 65.5 49 57.1
Atru.chr10.2205 Acer truncatum HOM05D002838 ORTHO05D002114 1.2e-08 65.1 85 43.5
Haze_06786 Corylus avellana HOM05D002838 ORTHO05D002114 1.2e-08 65.1 56 50.0
Eucgr.F03463 Eucalyptus grandis HOM05D002838 ORTHO05D002114 1.2e-08 65.1 54 57.4
Gohir.A13G138400 Gossypium hirsutum HOM05D002838 ORTHO05D002114 1.2e-08 65.1 85 41.2
Oeu005533.1 Olea europaea HOM05D002838 ORTHO05D002114 1.2e-08 65.1 52 57.7
Rhsim13G0154800 Rhododendron simsii HOM05D002838 ORTHO05D002114 1.2e-08 65.1 52 53.8
CiPaw.11G188700 Carya illinoinensis HOM05D002838 ORTHO05D002114 1.6e-08 64.7 49 57.1
Gohir.D13G143200 Gossypium hirsutum HOM05D002838 ORTHO05D002114 1.6e-08 64.7 85 43.5
Gorai.013G160100 Gossypium raimondii HOM05D002838 ORTHO05D002114 1.6e-08 64.7 85 43.5
Actinidia35340 Actinidia chinensis HOM05D002838 ORTHO05D002114 2.1e-08 64.3 52 51.9
Cfa020354 Carpinus fangiana HOM05D002838 ORTHO05D002114 2.1e-08 64.3 52 57.7
Lsat_1_v5_gn_1_128681 Lactuca sativa HOM05D002838 ORTHO05D002114 2.1e-08 64.3 108 36.1
Psat5g180440 Pisum sativum HOM05D002838 ORTHO05D002114 2.1e-08 64.3 49 59.2
Sabra04G0009300 Salix brachista HOM05D002838 ORTHO05D002114 2.1e-08 64.3 164 28.7
Thecc.06G087800 Theobroma cacao HOM05D002838 ORTHO05D002114 2.7e-08 63.9 56 51.8
Duzib235G0377 Durio zibethinus HOM05D002838 ORTHO05D002114 3.6e-08 63.5 52 53.8
Nitab4.5_0003812g0010 Nicotiana tabacum HOM05D002838 ORTHO05D002114 3.6e-08 63.5 165 30.9
CSS0016010 Camellia sinensis var. sinensis HOM05D002838 ORTHO05D002114 4.7e-08 63.2 52 53.8
CSS0035682 Camellia sinensis var. sinensis HOM05D002838 ORTHO05D002114 4.7e-08 63.2 52 53.8
AUR62015761 Chenopodium quinoa HOM05D002838 ORTHO05D002114 4.7e-08 63.2 52 55.8
AUR62020454 Chenopodium quinoa HOM05D002838 ORTHO05D002114 4.7e-08 63.2 52 55.8
Gohir.A10G013500 Gossypium hirsutum HOM05D002838 ORTHO05D002114 4.7e-08 63.2 49 55.1
Gohir.D10G013400 Gossypium hirsutum HOM05D002838 ORTHO05D002114 4.7e-08 63.2 49 55.1
Gorai.011G015100 Gossypium raimondii HOM05D002838 ORTHO05D002114 4.7e-08 63.2 49 55.1
Cfa000236 Carpinus fangiana HOM05D002838 ORTHO05D002114 6.1e-08 62.8 89 37.1
Potri.011G138700 Populus trichocarpa HOM05D002838 ORTHO05D002114 6.1e-08 62.8 70 47.1
vmacro09718 Vaccinium macrocarpon HOM05D002838 ORTHO05D002114 6.1e-08 62.8 52 51.9
FvH4_3g22550 Fragaria vesca HOM05D002838 ORTHO05D002114 8.0e-08 62.4 52 53.8
FAN11G1348 Fragaria x ananassa HOM05D002838 ORTHO05D002114 8.0e-08 62.4 52 53.8
FAN16G1110 Fragaria x ananassa HOM05D002838 ORTHO05D002114 8.0e-08 62.4 52 53.8
FAN21G2490 Fragaria x ananassa HOM05D002838 ORTHO05D002114 8.0e-08 62.4 52 53.8
FAN25G2301 Fragaria x ananassa HOM05D002838 ORTHO05D002114 8.0e-08 62.4 52 53.8
HanXRQChr05g0138091 Helianthus annuus HOM05D002838 ORTHO05D002114 8.0e-08 62.4 99 38.4
Cpa.g.sc198.43 Carica papaya HOM05D002838 ORTHO05D002114 1.0e-07 62.0 98 36.7
DCAR_024922 Daucus carota HOM05D002838 ORTHO05D002114 1.0e-07 62.0 82 41.5
Lj6g0022854 Lotus japonicus HOM05D002838 ORTHO05D002114 1.0e-07 62.0 86 41.9
Medtr3g051280 Medicago truncatula HOM05D002838 ORTHO05D002114 1.0e-07 62.0 49 57.1
Ah.04g165860 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.4e-07 61.6 52 55.8
EL10Ac4g07820 Beta vulgaris HOM05D002838 ORTHO05D002114 1.4e-07 61.6 49 57.1
CSS0006812 Camellia sinensis var. sinensis HOM05D002838 ORTHO05D002114 1.4e-07 61.6 52 50.0
CAN.G882.4 Capsicum annuum HOM05D002838 ORTHO05D002114 1.4e-07 61.6 69 47.8
CARHR265850 Cardamine hirsuta HOM05D007978 ORTHO05D002114 1.4e-07 61.6 72 41.7
Ca_14724_v3 Cicer arietinum L. HOM05D002838 ORTHO05D002114 1.4e-07 61.6 91 41.8
Sabra11G0124300 Salix brachista HOM05D002838 ORTHO05D002114 1.4e-07 61.6 49 57.1
MELO3C025384.2 Cucumis melo HOM05D002838 ORTHO05D002114 1.8e-07 61.2 52 55.8
MD11G1219200 Malus domestica HOM05D002838 ORTHO05D002114 1.8e-07 61.2 49 57.1
PSO541G3675 Papaver somniferum HOM05D002838 ORTHO05D002114 1.8e-07 61.2 76 44.7
Psat4g007400 Pisum sativum HOM05D002838 ORTHO05D002114 1.8e-07 61.2 86 41.9
Potri.004G017000 Populus trichocarpa HOM05D002838 ORTHO05D002114 1.8e-07 61.2 131 29.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.3e-07 60.8 52 55.8
Cpa.g.sc97.10 Carica papaya HOM05D002838 ORTHO05D002114 2.3e-07 60.8 69 47.8
CiPaw.10G070000 Carya illinoinensis HOM05D002838 ORTHO05D002114 2.3e-07 60.8 57 47.4
COL.COLO4_31756 Corchorus olitorius HOM05D002838 ORTHO05D002114 2.3e-07 60.8 57 47.4
Haze_09668 Corylus avellana HOM05D002838 ORTHO05D002114 2.3e-07 60.8 52 57.7
DCAR_022558 Daucus carota HOM05D002838 ORTHO05D002114 2.3e-07 60.8 52 50.0
Glyma.17G014700 Glycine max HOM05D002838 ORTHO05D002114 2.3e-07 60.8 52 51.9
Nn7g37163 Nelumbo nucifera HOM05D002838 ORTHO05D002114 2.3e-07 60.8 93 44.1
PSO675G8341 Papaver somniferum HOM05D002838 ORTHO05D002114 2.3e-07 60.8 76 44.7
RhsimUnG0251000 Rhododendron simsii HOM05D002838 ORTHO05D002114 2.3e-07 60.8 52 50.0
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.0e-07 60.5 82 37.8
Dinv22266 Davidia involucrata HOM05D002838 ORTHO05D002114 3.0e-07 60.5 49 53.1
Migut.M01770 Erythranthe guttata HOM05D002838 ORTHO05D002114 3.0e-07 60.5 86 43.0
Lj1A871G92 Lonicera japonica HOM05D002838 ORTHO05D002114 3.0e-07 60.5 49 55.1
Phvul.006G042200 Phaseolus vulgaris HOM05D002838 ORTHO05D002114 3.0e-07 60.5 91 39.6
TAR624G0885 Trochodendron aralioides HOM05D002838 ORTHO05D002114 3.0e-07 60.5 91 39.6
arahy.Tifrunner.gnm1.ann1.1KZE5K Arachis hypogaea HOM05D002838 ORTHO05D002114 4.0e-07 60.1 49 55.1
arahy.Tifrunner.gnm1.ann1.6V868Z Arachis hypogaea HOM05D002838 ORTHO05D002114 4.0e-07 60.1 49 55.1
arahy.Tifrunner.gnm1.ann1.F70XYS Arachis hypogaea HOM05D002838 ORTHO05D002114 4.0e-07 60.1 49 55.1
arahy.Tifrunner.gnm1.ann1.J0W1HE Arachis hypogaea HOM05D002838 ORTHO05D002114 4.0e-07 60.1 49 55.1
COL.COLO4_09656 Corchorus olitorius HOM05D002838 ORTHO05D002114 4.0e-07 60.1 102 36.3
Gohir.A06G148000 Gossypium hirsutum HOM05D002838 ORTHO05D002114 4.0e-07 60.1 81 42.0
PGR031G0146 Punica granatum HOM05D002838 ORTHO05D002114 4.0e-07 60.1 52 57.7
PGSC0003DMG400011263 Solanum tuberosum HOM05D002838 ORTHO05D002114 4.0e-07 60.1 57 47.4
ClCG10G005440 Citrullus lanatus HOM05D002838 ORTHO05D002114 5.2e-07 59.7 52 53.8
Ciclev10014916m.g Citrus clementina HOM05D002838 ORTHO05D002114 5.2e-07 59.7 183 27.9
Cc05_g13730 Coffea canephora HOM05D002838 ORTHO05D002114 5.2e-07 59.7 64 45.3
CsaV3_3G005180 Cucumis sativus L. HOM05D002838 ORTHO05D002114 5.2e-07 59.7 66 47.0
Glyma.07G259600 Glycine max HOM05D002838 ORTHO05D002114 5.2e-07 59.7 57 47.4
Manes.15G072500 Manihot esculenta HOM05D002838 ORTHO05D002114 5.2e-07 59.7 84 39.3
Nitab4.5_0009280g0030 Nicotiana tabacum HOM05D002838 ORTHO05D002114 5.2e-07 59.7 53 49.1
Peaxi162Scf00964g00003 Petunia axillaris HOM05D002838 ORTHO05D002114 5.2e-07 59.7 91 39.6
Potri.001G422966 Populus trichocarpa HOM05D002838 ORTHO05D002114 5.2e-07 59.7 48 54.2
Solyc07g064560.4 Solanum lycopersicum HOM05D002838 ORTHO05D002114 5.2e-07 59.7 163 28.2
Sopen07g032740 Solanum pennellii HOM05D002838 ORTHO05D002114 5.2e-07 59.7 163 28.2
Thecc.07G038800 Theobroma cacao HOM05D002838 ORTHO05D002114 5.2e-07 59.7 102 39.2
AL8G27360 Arabidopsis lyrata HOM05D007978 ORTHO05D002114 6.8e-07 59.3 92 37.0
MSTRG.6914 Avicennia marina HOM05D002838 ORTHO05D002114 6.8e-07 59.3 83 38.6
CANSAT56G1217 Cannabis sativa HOM05D002838 ORTHO05D002114 6.8e-07 59.3 91 37.4
Ciclev10008484m.g Citrus clementina HOM05D002838 ORTHO05D002114 6.8e-07 59.3 76 40.8
HanXRQChr16g0516021 Helianthus annuus HOM05D002838 ORTHO05D002114 6.8e-07 59.3 68 39.7
MD03G1202000 Malus domestica HOM05D002838 ORTHO05D002114 6.8e-07 59.3 49 57.1
Nitab4.5_0000653g0020 Nicotiana tabacum HOM05D002838 ORTHO05D002114 6.8e-07 59.3 54 50.0
Nitab4.5_0000994g0020 Nicotiana tabacum HOM05D002838 ORTHO05D002114 6.8e-07 59.3 56 44.6
Prupe.4G212100 Prunus persica HOM05D002838 ORTHO05D002114 6.8e-07 59.3 49 57.1
Sc17g0007270 Simmondsia chinensis HOM05D002838 ORTHO05D002114 6.8e-07 59.3 103 35.9
MSTRG.12970 Avicennia marina HOM05D002838 ORTHO05D002114 8.8e-07 58.9 52 53.8
CiPaw.09G090500 Carya illinoinensis HOM05D002838 ORTHO05D002114 8.8e-07 58.9 57 45.6
Lsat_1_v5_gn_4_59720 Lactuca sativa HOM05D002838 ORTHO05D002114 8.8e-07 58.9 87 36.8
Lalb_Chr15g0081021 Lupinus albus HOM05D002838 ORTHO05D002114 8.8e-07 58.9 64 45.3
RcHm_v2.0_Chr5g0039291 Rosa chinensis HOM05D002838 ORTHO05D002114 8.8e-07 58.9 52 51.9
SGA_v2.0_scaffold8G04311 Striga asiatica HOM05D002838 ORTHO05D002114 8.8e-07 58.9 49 51.0
Thecc.06G218900 Theobroma cacao HOM05D002838 ORTHO05D002114 8.8e-07 58.9 56 50.0
Oeu005534.1 Olea europaea HOM05D002838 ORTHO05D002114 1.2e-06 58.5 45 60.0
Sopen10g001240 Solanum pennellii HOM05D002838 ORTHO05D002114 1.2e-06 58.5 53 49.1
Ca_21089_v3 Cicer arietinum L. HOM05D002838 ORTHO05D002114 1.5e-06 58.2 107 35.5
Ca_30197_v3 Cicer arietinum L. HOM05D002838 ORTHO05D002114 1.5e-06 58.2 107 35.5
Hma1.2p1_0673F.1_g201310 Hydrangea macrophylla HOM05D002838 ORTHO05D002114 1.5e-06 58.2 68 45.6
Hma1.2p1_1222F.1_g268160 Hydrangea macrophylla HOM05D002838 ORTHO05D002114 1.5e-06 58.2 68 45.6
RcHm_v2.0_Chr5g0003491 Rosa chinensis HOM05D002838 ORTHO05D002114 1.5e-06 58.2 103 37.9
Sabra16G0289500 Salix brachista HOM05D002838 ORTHO05D002114 1.5e-06 58.2 48 56.2
Sc07g0002790 Simmondsia chinensis HOM05D002838 ORTHO05D002114 1.5e-06 58.2 51 56.9
Duzib160G0202 Durio zibethinus HOM05D002838 ORTHO05D002114 2.0e-06 57.8 52 48.1
Gohir.A05G169400 Gossypium hirsutum HOM05D002838 ORTHO05D002114 2.0e-06 57.8 52 48.1
Lalb_Chr20g0113921 Lupinus albus HOM05D002838 ORTHO05D002114 2.0e-06 57.8 49 51.0
Pp3c1_9860 Physcomitrium patens HOM05D002838 ORTHO05D002114 2.0e-06 57.8 50 54.0
Solyc10g005250.3 Solanum lycopersicum HOM05D002838 ORTHO05D002114 2.0e-06 57.8 53 49.1
GSVIVG01037639001 Vitis vinifera HOM05D002838 ORTHO05D002114 2.0e-06 57.8 52 50.0
Dinv40750 Davidia involucrata HOM05D002838 ORTHO05D002114 2.6e-06 57.4 52 48.1
Duzib192G0666 Durio zibethinus HOM05D002838 ORTHO05D002114 2.6e-06 57.4 52 50.0
ECA234G4767 Erigeron canadensis HOM05D002838 ORTHO05D002114 2.6e-06 57.4 62 45.2
Nitab4.5_0000749g0180 Nicotiana tabacum HOM05D002838 ORTHO05D002114 2.6e-06 57.4 54 48.1
Phvul.003G077800 Phaseolus vulgaris HOM05D002838 ORTHO05D002114 2.6e-06 57.4 107 33.6
THA.LOC104811939 Tarenaya hassleriana HOM05D002838 ORTHO05D002114 2.6e-06 57.4 52 46.2
THA.LOC104825122 Tarenaya hassleriana HOM05D002838 ORTHO05D002114 2.6e-06 57.4 75 37.3
TPR.G16587 Trifolium pratense HOM05D002838 ORTHO05D002114 2.6e-06 57.4 98 36.7
unitig_26.g9957 Utricularia gibba HOM05D002838 ORTHO05D002114 2.6e-06 57.4 52 50.0
arahy.Tifrunner.gnm1.ann1.PW7H5Q Arachis hypogaea HOM05D002838 ORTHO05D002114 3.4e-06 57.0 49 49.0
Glyma.08G315200 Glycine max HOM05D002838 ORTHO05D002114 3.4e-06 57.0 88 38.6
Gorai.009G177800 Gossypium raimondii HOM05D002838 ORTHO05D002114 3.4e-06 57.0 90 37.8
MBI02_g22111_MAGBIO Magnolia biondii HOM05D002838 ORTHO05D002114 3.4e-06 57.0 51 51.0
QL05p073529 Quercus lobata HOM05D002838 ORTHO05D002114 3.4e-06 57.0 89 38.2
QL05p073767 Quercus lobata HOM05D002838 ORTHO05D002114 3.4e-06 57.0 89 38.2
Hund23254 Selenicereus undatus HOM05D002838 ORTHO05D002114 3.4e-06 57.0 47 55.3
unitig_0.g2391 Utricularia gibba HOM05D002838 ORTHO05D002114 3.4e-06 57.0 49 57.1
AL7G31970 Arabidopsis lyrata HOM05D007978 ORTHO05D002114 4.4e-06 56.6 98 35.7
Migut.M01307 Erythranthe guttata HOM05D002838 ORTHO05D002114 4.4e-06 56.6 45 48.9
FvH4_3g02310 Fragaria vesca HOM05D002838 ORTHO05D002114 4.4e-06 56.6 105 35.2
VMungo0540G1905 Vigna mungo HOM05D002838 ORTHO05D002114 4.4e-06 56.6 88 40.9
BcaC09g51190 Brassica carinata HOM05D007978 ORTHO05D002114 5.7e-06 56.2 125 32.8
C01p15900 Brassica napus HOM05D007978 ORTHO05D002114 5.7e-06 56.2 125 32.8
BolC1t01544H Brassica oleracea HOM05D007978 ORTHO05D002114 5.7e-06 56.2 125 32.8
CANSAT56G2759 Cannabis sativa HOM05D002838 ORTHO05D002114 5.7e-06 56.2 48 50.0
Migut.H01830 Erythranthe guttata HOM05D002838 ORTHO05D002114 5.7e-06 56.2 49 49.0
Thhalv10025850m.g Eutrema salsugineum HOM05D007978 ORTHO05D002114 5.7e-06 56.2 45 53.3
Glyma.18G098900 Glycine max HOM05D002838 ORTHO05D002114 5.7e-06 56.2 88 38.6
Rhsim06G0216600 Rhododendron simsii HOM05D002838 ORTHO05D002114 5.7e-06 56.2 70 40.0
RcHm_v2.0_Chr5g0003501 Rosa chinensis HOM05D002838 ORTHO05D002114 5.7e-06 56.2 103 36.9
Sed0012974 Sechium edule HOM05D002838 ORTHO05D002114 5.7e-06 56.2 52 51.9
PGSC0003DMG400035363 Solanum tuberosum HOM05D002838 ORTHO05D002114 5.7e-06 56.2 77 42.9
THA.LOC104813422 Tarenaya hassleriana HOM05D002838 ORTHO05D002114 5.7e-06 56.2 47 57.4
unitig_578.g15998 Utricularia gibba HOM05D002838 ORTHO05D002114 5.7e-06 56.2 53 49.1
unitig_749.g13965 Utricularia gibba HOM05D002838 ORTHO05D002114 5.7e-06 56.2 37 62.2
BolC7t45640H Brassica oleracea HOM05D007978 ORTHO05D002114 7.5e-06 55.8 58 44.8
Duzib268G0745 Durio zibethinus HOM05D002838 ORTHO05D002114 7.5e-06 55.8 49 53.1
Atru.chr2.3346 Acer truncatum HOM05D002838 ORTHO05D002114 9.8e-06 55.5 56 41.1
AT4G21895 Arabidopsis thaliana HOM05D007978 ORTHO05D002114 9.8e-06 55.5 81 38.3
arahy.Tifrunner.gnm1.ann1.KDA1J3 Arachis hypogaea HOM05D002838 ORTHO05D002114 9.8e-06 55.5 49 46.9
A01p13200 Brassica napus HOM05D007978 ORTHO05D002114 9.8e-06 55.5 146 29.5
A03p53000 Brassica napus HOM05D007978 ORTHO05D002114 9.8e-06 55.5 103 32.0
BraA01t01264Z Brassica rapa HOM05D007978 ORTHO05D002114 9.8e-06 55.5 146 29.5
CAN.G337.127 Capsicum annuum HOM05D002838 ORTHO05D002114 9.8e-06 55.5 90 38.9
HanXRQChr17g0557341 Helianthus annuus HOM05D002838 ORTHO05D002114 9.8e-06 55.5 93 36.6


User provided reference genes

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