Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.0e-171 606.7 316 100.0
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 3.1e-144 515.4 319 88.7
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 2.1e-108 396.4 356 66.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.3e-93 344.7 351 61.0
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.2e-82 310.8 342 58.5
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 1.1e-72 277.7 359 52.6
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.9e-70 269.2 351 52.1
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.9e-69 266.9 348 52.9
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 5.6e-69 265.4 371 50.1
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-68 263.8 352 52.0
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.6e-68 263.8 349 52.4
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 2.8e-68 263.1 351 51.9
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.1e-68 261.5 352 52.3
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.4e-67 260.8 368 50.3
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.4e-67 260.8 370 49.5
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 3.1e-67 259.6 347 51.6
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 4.0e-67 259.2 343 51.9
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 2.6e-66 256.5 359 49.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 3.4e-66 256.1 368 50.8
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 3.4e-66 256.1 361 50.7
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 4.5e-66 255.8 353 50.1
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.0e-65 254.6 363 47.4
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.9e-65 253.1 359 49.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 2.9e-65 253.1 341 50.4
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 6.5e-65 251.9 362 48.3
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.5e-64 250.0 370 49.5
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 9.3e-64 248.1 344 50.0
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 1.2e-63 247.7 369 49.1
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 3.5e-63 246.1 365 48.5
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 3.5e-63 246.1 344 49.7
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 5.1e-62 242.3 383 46.7
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 6.7e-62 241.9 361 47.9
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 2.5e-61 240.0 363 49.9
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.5e-61 240.0 359 48.5
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 7.4e-61 238.4 356 48.6
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.8e-60 235.7 329 49.8
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 6.2e-60 235.3 364 47.0
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 8.2e-60 235.0 329 49.5
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 1.8e-59 233.8 368 47.6
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 2.4e-59 233.4 342 48.2
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 3.1e-59 233.0 354 48.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 9.0e-59 231.5 353 47.6
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.2e-58 231.1 341 48.4
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.6e-58 229.9 341 48.4
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 5.8e-58 228.8 344 46.2
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.3e-57 227.6 352 47.7
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 1.7e-57 227.3 361 46.8
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 2.9e-57 226.5 363 46.8
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 3.2e-56 223.0 342 47.1
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.9e-54 216.1 388 43.0
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 6.7e-54 215.3 332 46.4
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 1.1e-53 214.5 324 47.8
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 3.3e-53 213.0 363 44.9
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.6e-52 210.7 380 43.9
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 2.2e-52 210.3 332 48.8
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 3.7e-52 209.5 322 48.4
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 6.3e-52 208.8 343 49.0
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 5.3e-51 205.7 424 41.3
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 6.9e-51 205.3 453 38.4
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 1.5e-50 204.1 296 49.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.5e-48 196.8 353 45.6
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 5.5e-48 195.7 391 39.4
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 5.5e-48 195.7 296 47.3
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 7.2e-48 195.3 333 44.1
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 2.7e-47 193.4 334 42.2
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 7.9e-47 191.8 292 48.6
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 1.0e-46 191.4 327 45.3
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 6.7e-46 188.7 371 40.7
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 3.3e-45 186.4 355 42.3
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 4.3e-45 186.0 354 41.2
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 5.3e-43 179.1 294 46.3
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 5.3e-43 179.1 350 42.9
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.2e-42 177.9 410 38.3
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 5.9e-42 175.6 361 40.7
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.0e-41 174.9 356 42.1
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.3e-41 174.5 321 43.6
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 2.5e-40 170.2 352 43.2
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 2.5e-40 170.2 352 43.2
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 4.2e-40 169.5 277 46.9
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.2e-39 167.9 343 42.0
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-38 164.5 356 41.3
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-38 164.5 345 42.0
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.4e-38 164.5 345 42.0
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 2.6e-37 160.2 343 39.7
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.3e-36 157.9 403 37.7
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 2.2e-36 157.1 267 43.1
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.8e-36 156.8 293 41.3
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 6.3e-36 155.6 406 37.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 8.2e-36 155.2 359 40.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 4.1e-35 152.9 372 37.6
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 1.7e-33 147.5 140 65.7
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 8.5e-33 145.2 346 35.5
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.9e-32 144.1 346 35.5
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.6e-31 139.8 345 39.7
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 8.5e-25 118.6 315 35.9
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.9e-24 117.5 352 32.7
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 3.2e-24 116.7 380 33.9
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 4.2e-24 116.3 358 34.6
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.0e-22 111.7 245 38.8
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.5e-21 107.8 302 34.1
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 3.4e-21 106.7 331 32.6
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.7e-20 104.4 304 38.8
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.4e-19 101.3 131 47.3
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.4e-19 100.5 191 44.5
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 2.2e-17 94.0 298 30.5
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.0e-14 83.6 62 67.7
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.0e-14 83.2 62 67.7
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.2e-14 82.8 64 64.1
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-13 81.6 62 66.1
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.6e-13 80.5 62 64.5
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 9.8e-13 78.6 107 45.8
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.3e-12 78.2 62 62.9
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-12 77.0 137 41.6
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-12 77.0 137 41.6
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.1e-11 75.1 48 79.2
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.6e-10 71.2 157 36.3
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-10 70.1 53 67.9
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.5e-08 64.7 146 37.7
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 3.3e-08 63.5 181 29.3
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 5.6e-08 62.8 42 76.2
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 1.8e-06 57.8 183 27.9
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 3.0e-06 57.0 63 52.4


User provided reference genes

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