Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 0.0e+00 1154.0 583 100.0
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.3e-278 961.8 546 91.0
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.6e-272 940.6 546 89.7
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.4e-260 900.6 539 86.3
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 8.3e-252 873.6 572 79.4
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 7.8e-250 867.1 574 77.7
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 2.6e-205 719.2 571 67.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 3.8e-204 715.3 566 65.9
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.3e-201 706.1 605 63.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.1e-200 703.7 574 65.3
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 7.4e-200 701.0 569 64.0
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 2.8e-199 699.1 568 64.3
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 8.2e-199 697.6 587 63.9
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 5.3e-198 694.9 574 63.4
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 6.9e-198 694.5 586 62.5
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 4.5e-197 691.8 570 64.2
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.0e-196 690.6 586 62.5
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.3e-196 690.3 571 63.6
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 2.2e-196 689.5 584 64.2
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 8.5e-196 687.6 571 64.6
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.1e-195 687.2 568 63.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 4.2e-195 685.3 572 62.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 4.2e-195 685.3 555 65.4
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 9.4e-195 684.1 569 63.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.2e-194 683.7 571 62.5
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-194 683.3 567 63.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.6e-194 683.3 566 64.1
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 2.7e-194 682.6 554 64.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 4.7e-194 681.8 569 64.5
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.1e-194 681.4 570 63.3
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 6.1e-194 681.4 571 64.6
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.9e-194 681.0 569 64.3
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 7.9e-194 681.0 571 64.8
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.0e-193 680.6 552 63.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.4e-193 680.2 569 64.0
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.4e-193 680.2 447 74.5
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.4e-193 680.2 569 64.7
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.3e-193 679.5 571 62.7
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 3.0e-193 679.1 572 63.3
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 5.1e-193 678.3 573 62.5
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 6.7e-193 677.9 549 63.6
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 8.8e-193 677.6 592 60.5
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.1e-192 677.2 575 62.8
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.1e-192 677.2 566 63.6
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.1e-192 677.2 571 63.7
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.3e-192 675.6 567 62.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.3e-192 675.6 573 63.0
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 4.4e-192 675.2 546 64.5
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.7e-192 674.9 556 63.7
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.3e-191 673.7 572 63.1
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.7e-191 673.3 574 62.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.7e-191 673.3 565 62.8
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 3.7e-191 672.2 553 63.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.7e-191 672.2 573 62.0
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 6.3e-191 671.4 550 63.6
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.8e-190 669.8 571 61.1
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 5.3e-190 668.3 478 70.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 7.0e-190 667.9 570 63.0
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.6e-189 666.0 473 69.8
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.3e-188 663.7 574 62.7
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.7e-188 663.3 570 61.4
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.2e-188 662.9 568 62.1
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.9e-188 662.5 572 61.7
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.8e-188 662.1 556 62.9
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 5.0e-188 661.8 575 61.4
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 8.5e-188 661.0 558 62.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.5e-187 660.2 484 69.2
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.5e-187 659.4 570 62.5
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 3.2e-187 659.1 571 61.3
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 9.4e-187 657.5 451 72.1
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 1.2e-186 657.1 569 62.0
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.7e-185 651.4 485 69.1
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.1e-184 650.6 438 73.7
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.1e-184 650.6 557 62.3
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.0e-184 649.8 435 74.0
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 3.3e-184 649.0 579 60.1
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 3.3e-184 649.0 445 71.5
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 9.7e-184 647.5 445 71.5
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.8e-183 646.0 429 74.4
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 3.7e-183 645.6 564 60.8
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.4e-182 643.7 450 71.3
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.8e-182 643.3 563 61.6
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.8e-182 643.3 563 61.5
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.4e-182 642.9 437 72.8
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.6e-181 640.2 574 59.1
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 5.9e-181 638.3 578 59.5
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.9e-180 636.0 576 60.2
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 3.8e-180 635.6 436 69.7
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 5.5e-179 631.7 563 61.3
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 9.4e-179 630.9 571 61.6
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.2e-178 630.6 447 69.8
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 4.0e-177 625.5 587 59.5
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 8.8e-177 624.4 582 59.5
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 2.2e-175 619.8 438 68.9
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.1e-174 617.5 584 59.2
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 4.1e-174 615.5 567 59.1
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 4.5e-173 612.1 571 58.7
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.7e-172 610.1 531 61.8
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 3.8e-172 609.0 562 58.7
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 6.5e-172 608.2 544 58.6
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 8.5e-172 607.8 560 58.9
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.2e-171 605.9 573 58.5
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 3.2e-171 605.9 561 58.6
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.2e-170 604.0 562 58.0
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.6e-170 603.6 569 57.5
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 2.7e-170 602.8 556 58.6
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 2.7e-170 602.8 423 70.4
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.0e-169 600.9 572 57.0
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 3.0e-169 599.4 571 58.0
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.0e-169 599.0 584 57.9
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.6e-168 596.3 558 58.2
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 1.1e-166 590.9 454 64.5
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.9e-163 580.1 524 63.7
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.0e-161 574.3 571 55.9
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.3e-161 573.2 463 62.0
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 9.2e-158 561.2 351 76.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 4.7e-154 548.9 382 68.8
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 1.8e-153 547.0 510 56.3
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.3e-151 540.8 522 55.6
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.3e-148 530.0 570 51.9
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.1e-137 494.6 456 59.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.5e-136 490.7 505 50.9
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 9.2e-134 481.5 450 53.8
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.6e-128 463.4 473 54.8
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 5.6e-123 445.7 507 47.3
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 6.0e-117 425.6 446 47.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 6.0e-117 425.6 258 77.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.8e-113 414.1 508 48.4
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 5.1e-108 396.0 441 46.5
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.8e-89 334.3 322 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 6.9e-89 332.4 302 54.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.5e-88 331.3 473 44.8
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.9e-86 324.3 465 44.7
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 2.5e-86 323.9 477 39.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 4.8e-74 283.1 376 45.2
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 4.7e-69 266.5 453 36.6
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.7e-63 248.1 326 39.9
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.7e-61 240.7 258 52.3
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.5e-46 191.0 540 31.3
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 9.8e-35 152.5 245 40.8
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 3.2e-33 147.5 511 24.1
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 1.0e-31 142.5 156 50.6
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.1e-14 85.9 92 56.5
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.3e-10 72.4 81 50.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 7.1e-09 66.6 49 61.2
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 2.5e-06 58.2 306 23.9


User provided reference genes

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