Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.1e-67 258.8 125 100.0
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 9.7e-65 250.0 137 91.2
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 4.5e-62 241.1 125 92.8
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 1.4e-60 236.1 125 89.6
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 1.9e-60 235.7 125 88.8
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 1.6e-59 232.6 125 88.0
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 1.6e-59 232.6 125 88.0
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 2.1e-59 232.3 125 87.2
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 2.1e-59 232.3 125 89.6
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.0e-58 229.9 125 85.6
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.0e-58 229.9 125 85.6
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 1.4e-58 229.6 125 88.0
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 1.4e-58 229.6 125 88.0
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 1.8e-58 229.2 125 85.6
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 2.3e-58 228.8 125 86.4
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 3.0e-58 228.4 125 85.6
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.9e-58 228.0 125 84.8
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 5.2e-58 227.6 125 86.4
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 6.7e-58 227.3 125 84.8
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 6.7e-58 227.3 125 84.8
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 6.7e-58 227.3 125 84.8
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 8.8e-58 226.9 124 84.7
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 1.1e-57 226.5 125 85.6
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 1.1e-57 226.5 125 85.6
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 85.6
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 2.0e-57 225.7 125 85.6
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 2.0e-57 225.7 125 87.2
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 3.3e-57 224.9 125 84.0
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 3.3e-57 224.9 125 84.0
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 4.4e-57 224.6 125 84.0
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 84.8
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 82.4
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 5.7e-57 224.2 124 84.7
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 5.7e-57 224.2 124 84.7
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 84.0
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 7.4e-57 223.8 125 84.0
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 9.7e-57 223.4 125 84.0
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.2e-56 222.2 125 83.2
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 2.8e-56 221.9 125 83.2
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 2.8e-56 221.9 125 83.2
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 2.8e-56 221.9 125 83.2
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 3.7e-56 221.5 125 82.4
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 3.7e-56 221.5 125 81.6
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 3.7e-56 221.5 125 85.6
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.3e-56 220.7 125 84.8
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.3e-56 220.7 125 84.8
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 6.3e-56 220.7 125 88.8
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 2.4e-55 218.8 125 84.0
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.4e-55 218.8 125 84.0
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.4e-55 218.8 125 84.0
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 5.3e-55 217.6 125 84.8
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 5.3e-55 217.6 125 84.0
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 7.0e-55 217.2 132 80.3
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 7.0e-55 217.2 125 82.4
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 1.2e-54 216.5 125 80.8
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.0e-54 215.7 125 80.0
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.5e-54 214.5 125 83.2
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 7.7e-54 213.8 125 80.0
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 83.2
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 83.2
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 80.0
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 80.8
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 5.0e-53 211.1 125 76.8
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 3.2e-52 208.4 125 80.8
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 3.2e-52 208.4 125 80.0
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 3.2e-52 208.4 125 80.0
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 5.5e-52 207.6 125 79.2
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 7.2e-52 207.2 125 80.8
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 7.2e-52 207.2 125 77.6
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 1.2e-51 206.5 125 79.2
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 1.2e-51 206.5 125 80.8
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 2.7e-51 205.3 125 79.2
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 4.7e-51 204.5 125 76.0
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 4.7e-51 204.5 125 80.0
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 4.7e-51 204.5 125 80.0
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 4.7e-51 204.5 125 80.0
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 1.8e-50 202.6 125 79.2
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 5.2e-50 201.1 125 79.2
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 8.8e-50 200.3 103 89.3
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 1.2e-49 199.9 125 75.2
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 1.5e-49 199.5 108 86.1
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 2.0e-49 199.1 125 76.8
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 3.3e-49 198.4 103 89.3
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 3.3e-49 198.4 150 68.0
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 1.3e-48 196.4 172 60.5
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 1.3e-48 196.4 125 76.8
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 2.8e-48 195.3 204 52.9
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 8.2e-48 193.7 125 71.2
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 8.2e-48 193.7 103 87.4
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 5.3e-47 191.0 103 85.4
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 7.0e-47 190.7 125 70.4
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 9.1e-47 190.3 125 68.8
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 9.1e-47 190.3 125 73.6
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 9.1e-47 190.3 125 71.2
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 1.7e-45 186.0 125 72.0
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 2.9e-45 185.3 125 74.4
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 3.2e-44 181.8 125 68.0
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 4.2e-44 181.4 122 64.8
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 9.4e-44 180.3 124 67.7
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 1.6e-43 179.5 125 68.8
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 2.7e-43 178.7 125 69.6
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 1.8e-42 176.0 125 70.4
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 5.2e-42 174.5 122 64.8
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 5.2e-42 174.5 122 64.8
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 2.6e-41 172.2 120 70.0
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 1.4e-39 166.4 125 67.2
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 1.4e-39 166.4 125 67.2
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 9.1e-39 163.7 125 67.2
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 2.9e-37 158.7 119 66.4
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 6.5e-37 157.5 113 63.7
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 8.6e-37 157.1 126 65.1
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 1.2e-30 136.7 81 79.0
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 1.2e-30 136.7 81 79.0
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 1.7e-24 116.3 108 57.4
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 1.6e-22 109.8 81 67.9
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 1.0e-21 107.1 81 67.9
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 6.6e-21 104.4 58 79.3
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 6.6e-21 104.4 58 79.3
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 4.3e-20 101.7 78 67.9
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 4.3e-20 101.7 78 67.9
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 3.6e-19 98.6 53 83.0
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 1.4e-18 96.7 66 65.2
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.6e-17 92.4 69 69.6
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 1.3e-16 90.1 58 70.7
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 1.1e-15 87.0 65 67.7
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 1.5e-12 76.6 45 77.8
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 5.6e-12 74.7 44 79.5
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 1.6e-11 73.2 60 70.0
SMO230G0118 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 4.1e-07 58.5 40 65.0


User provided reference genes

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