Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 9.1e-273 943.0 476 100.0
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.7e-242 841.3 545 82.2
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 2.1e-205 719.2 519 72.6
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 9.4e-169 597.4 519 61.3
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 7.7e-155 551.2 521 58.0
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.9e-138 495.7 521 53.4
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.9e-122 442.6 489 51.7
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.9e-119 431.8 529 46.5
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 3.2e-116 422.9 529 45.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 9.3e-116 421.4 525 46.3
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.0e-114 417.9 405 58.5
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 9.6e-113 411.4 532 45.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 2.1e-112 410.2 531 45.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 6.9e-111 405.2 532 44.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.0e-110 403.7 549 43.5
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.4e-110 402.9 530 44.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.7e-109 400.6 553 44.7
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.2e-109 400.2 545 42.2
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 3.2e-108 396.4 527 43.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 4.2e-108 396.0 556 42.3
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.2e-107 394.4 529 45.2
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.0e-106 391.3 535 42.8
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.3e-106 391.0 527 43.8
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 6.7e-106 388.7 531 44.4
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.5e-105 387.5 522 44.1
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.3e-105 386.0 527 42.5
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.6e-104 384.0 523 43.8
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.8e-104 383.3 523 44.0
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 2.8e-104 383.3 531 44.3
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.2e-104 382.1 456 49.6
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 3.1e-103 379.8 525 42.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 4.0e-103 379.4 509 43.0
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.4e-102 376.3 525 42.3
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.5e-102 375.9 525 42.3
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 9.9e-102 374.8 533 43.2
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 9.9e-102 374.8 507 44.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.3e-101 374.4 523 42.1
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 4.2e-100 369.4 527 42.1
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.1e-100 368.6 534 43.8
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.6e-99 367.5 527 43.8
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 6.0e-99 365.5 512 42.2
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 7.9e-99 365.2 539 41.6
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 7.9e-99 365.2 517 42.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 2.3e-98 363.6 528 40.2
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 8.7e-98 361.7 519 41.4
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.9e-97 360.5 518 41.3
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 9.6e-97 358.2 512 42.4
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 9.6e-97 358.2 533 41.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.3e-96 357.8 519 41.4
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.6e-96 357.5 508 44.9
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.6e-96 357.5 530 42.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 4.8e-96 355.9 534 41.2
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.8e-95 354.0 526 40.9
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.8e-95 354.0 538 40.0
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.9e-95 352.1 544 39.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.0e-94 350.5 545 39.4
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.6e-94 350.1 542 40.0
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.4e-94 349.7 542 40.0
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 7.6e-94 348.6 542 39.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 7.6e-94 348.6 555 39.8
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 6.5e-93 345.5 516 40.9
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.9e-92 344.0 526 39.4
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.9e-92 344.0 534 39.9
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.5e-92 343.6 526 41.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 4.2e-92 342.8 527 39.8
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 5.5e-92 342.4 520 41.2
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-92 341.7 559 38.6
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.2e-91 341.3 523 39.6
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.2e-91 341.3 525 39.6
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.1e-91 340.5 526 40.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.7e-91 340.1 527 41.4
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.7e-91 340.1 530 40.0
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.9e-91 338.6 523 39.2
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.0e-90 338.2 527 40.2
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.0e-90 338.2 527 40.2
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.8e-90 337.4 534 39.5
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.8e-90 337.4 527 39.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.3e-90 337.0 527 40.0
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.3e-90 337.0 524 39.7
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.3e-90 337.0 519 39.9
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 5.1e-90 335.9 519 40.3
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.5e-89 334.3 518 40.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 4.3e-89 332.8 530 39.8
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 4.3e-89 332.8 526 40.9
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.7e-89 332.4 528 39.0
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 7.4e-89 332.0 512 40.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 2.1e-88 330.5 545 38.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 1.1e-87 328.2 508 41.3
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.8e-87 327.4 525 39.4
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.8e-87 327.4 514 40.5
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.8e-87 327.4 525 40.0
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 5.9e-86 322.4 535 39.4
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.0e-85 321.6 515 39.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 6.5e-85 318.9 434 44.7
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 6.5e-85 318.9 527 38.7
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 6.5e-85 318.9 527 38.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.1e-84 318.2 597 36.0
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.6e-83 314.3 525 38.7
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 6.1e-83 312.4 531 37.9
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 9.7e-81 305.1 523 38.8
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.2e-80 303.9 525 37.1
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.1e-79 301.6 539 37.8
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 3.1e-79 300.1 520 36.9
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 4.1e-79 299.7 524 38.0
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.5e-76 290.4 527 37.6
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.7e-75 287.0 535 36.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.8e-74 284.3 694 31.8
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.8e-74 284.3 386 43.0
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.1e-73 281.6 384 43.0
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.8e-71 274.2 461 39.0
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.1e-71 271.9 426 40.6
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.2e-67 261.5 378 40.2
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.6e-67 261.2 558 32.3
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 2.4e-63 247.3 558 32.3
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 4.2e-60 236.5 524 32.6
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 5.5e-60 236.1 551 31.4
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 6.1e-59 232.6 333 41.7
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 5.2e-58 229.6 524 33.6
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.3e-55 219.5 345 40.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 2.2e-53 214.2 215 54.4
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 8.5e-53 212.2 378 39.7
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.0e-50 203.4 276 45.7
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.7e-46 190.7 482 30.5
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.3e-40 169.5 326 35.9
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.0e-38 164.5 278 38.1
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.3e-37 161.0 261 38.7
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.2e-34 149.8 254 40.2
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 9.2e-31 139.0 107 62.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.0e-30 137.9 438 29.5
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 3.3e-28 130.6 237 33.8
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 3.6e-27 127.1 153 42.5
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 8.0e-27 125.9 153 43.1
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 8.9e-26 122.5 274 34.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.5e-25 121.7 147 42.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.9e-24 117.5 158 38.6
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 4.6e-22 110.2 111 48.6
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 3.0e-21 107.5 177 37.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 4.0e-18 97.1 181 34.8
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 9.9e-17 92.4 321 27.4
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.7e-16 91.7 97 46.4
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 3.0e-13 80.9 154 33.8
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 4.7e-11 73.6 108 40.7
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 8.1e-11 72.8 168 26.2
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 4.0e-10 70.5 184 24.5
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 6.0e-06 56.6 97 35.1
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 7.8e-06 56.2 70 44.3


User provided reference genes

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